Scaffold Ga0104988_10518

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10518
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16789
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (86.49%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F011483	Metagenome	290	Y
F015970	Metagenome / Metatranscriptome	250	Y
F022157	Metagenome	215	Y
F030692	Metagenome	184	N
F043818	Metagenome / Metatranscriptome	155	Y
F061577	Metagenome	131	N
F062704	Metagenome	130	N
F088497	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1051810	F061577	N/A	MPRPKTEMTKSGKTIAVRATLSEWNEFKRLGGTKWLRQLLAESIEKHQQTKETK*
Ga0104988_1051812	F015970	AGGAG	MMAFNKAKWEAYQQLNDDDIMDAISGSVAIPLAIKSGDWEYAQQFIKDRIDNKMTRRAELALYSIIKTSSIDDDDELRMLRTLWLKNEYKGDK*
Ga0104988_1051813	F043818	AGGGGG	MRLKNTVATILEENQNELFCPFCTKSKGNEIDCCDQSGTWFKLSDFDFDTQFSIAQQIFNLQKGIPNKKSD*
Ga0104988_1051818	F022157	GGAGG	MWDVFVTFILMAFGAFIVIAFGAILIWVLYLLQNEVDND*
Ga0104988_105182	F088497	GAGG	MSEKLEWQALWDAMKANPAEWIPTTEEMYWEMLIAVPPRAQNRSAFLVGEADHHNAEGYPVYSCFKRAGDTFYAKNMTFKQFNIEVAI*
Ga0104988_1051824	F002420	AGGAG	MTFRESTIKYVKDILRARTIHEVIAKELQEAHLRKLEAETAAEYANAAIQYNEQRIARLQKQLLEHTQEGDYA*
Ga0104988_1051829	F011483	AGG	MTYDLVAYLRSEIKELHNILHETQFALAQANVRLNRRSEPLTEERIYTLYRRSLDWRQLARDIEADHDIE*
Ga0104988_105183	F062704	AGGTGG	MTNTQALTQALILAITAPDDVKAQQAIQLSEDLVMRLNSAEVEQCKADVLLILEMA*
Ga0104988_105185	F030692	GGAG	MAEIEDKKGVVVKFDPIEYEALRAIGDGNISEGFRVCLRWAVHFHAIGLRSDDNLEYVGLCTVAD*