Scaffold Ga0104988_10474

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10474
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15866
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002934	Metagenome / Metatranscriptome	519	Y
F004639	Metagenome / Metatranscriptome	429	Y
F009401	Metagenome / Metatranscriptome	318	Y
F012870	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1047414	F002934	AGGCGG	MNMKHPAIISIGAFLAVWGTTSNFSLDYRSILGAVVAGVFGYATPKK*
Ga0104988_1047422	F009401	AGGAG	MAKLKITRADGQVQEYEITPLLEYSFEQYAKKGFHKALIEDSKQSDIYWLCWDAIRRSGETVKPFGEDFIATLRSVEVLESDPLG*
Ga0104988_1047424	F012870	GGAG	MTDLAQWEKENAAFLTKIGQVASKPEPKQKKDEE*
Ga0104988_104745	F004639	AGCAGG	MGHIQFLNQDGEWESFPTDEQEANLRENAKTLEELGFQLICQGCNKFPNATQIRERWLKHEWTCSACGVVNSAGKA*