Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10314 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10314 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	13378
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13378

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011482	Metagenome / Metatranscriptome	290	Y
F020531	Metagenome	223	Y
F027488	Metagenome	194	N
F035280	Metagenome	172	Y
F066709	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1031416	F035280	AGTAGG	MERKIGRYWFAWGRTSGFALGFSIDKYHWTIDLGFWYIGQEF*
Ga0104988_1031420	F066709	N/A	LTAPIETVEVKRDRRWKDTGNLYIETECWSDVLGCWYASGISVSKASHWSFILEDSVVTVPTDRVRLAIAQNGLKREMNRPEYSTKGYTITVAELLKVSLRHHQSPSQSQPT*
Ga0104988_103143	F011482	GGGGG	MSEEVKPSLGEIMRRLDDLTMEVKQMNLNIGQTYLRKDVYESDSERFSQAMVHITDRLEKMESRSEWVVRTVGGLMIATIVGASVYVGQIIGF*
Ga0104988_103147	F027488	GGAGG	VSIRWITKVWADSPYDGTKLLIHLALADISHDDGRFFASQSNLASKGRCSVEYVRKVINEMIADGHLKIITKGNSRGNATVYQLLWKKLPNSVGDEQSLGGVELPNSDTLNSPTLEVQLPNSTPYHPSYTSVLSTTKSDETAIAVVALSEAVARKWWEKQRVKPLGKSAWHSLLAICQAAEKRGYTAEQIEQALDYIGTVPSMRQMDLVLRGVGVKTKHEQSAIRAIELSEKLRNESL*
Ga0104988_103148	F020531	N/A	MSLSDIAVLVGFIGIYDLRIQVDELKVRAWAESFDSDLPLQEAKRIVSWHYANFDTAIQPSHINKEWRRRMSDEREREKSRLLSLEFEEREKQKASPEVIAKWKKEFREYMERNRVTDAPLETDSGTMAPDA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10314

Overview

Ecosystem & Geography

Associated Families

Sequences