Scaffold Ga0104988_10307

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10307
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13283
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009401	Metagenome / Metatranscriptome	318	Y
F012870	Metagenome / Metatranscriptome	276	Y
F014015	Metagenome	266	Y
F023587	Metagenome	209	Y
F050367	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1030719	F009401	AGG	MAKLKVTRADGSVGEYPITPLVQYGFEIYAKKGFHKAFVEDQKQSDIFWLAWECIRRSGETVKPFGEQFIETLASVEVLDDDPLA*
Ga0104988_1030721	F012870	GGAG	MTDMEQWEKENEAFLAKIGQGKPAVKPTSTKKDEE*
Ga0104988_103075	F014015	AGAAGG	MAEMVIFEDGTATVMGGELEEPQDIVIYCDLCNEPVAITPEANDQVFVTCLRCHAVSQINIKANKEPDDQSQA*
Ga0104988_103077	F023587	AGCAGG	MKATEALINAIDIMQDRGKVYGHPKINQGRIASRLSCLLDYPITDAQAALAMVEVKLARITESPSHVDSYIDAIAYLSIAVQLQTEEDELYV*
Ga0104988_103078	F050367	AGG	MNTWTILTVVGFGFALYFSFSFGYEVGYDRGNVDGRKALRKQLEQVGR*