Scaffold Ga0104988_10258

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10258
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12510
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F015570	Metagenome	253	Y
F024504	Metagenome	205	N
F029673	Metagenome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1025814	F004231	AGGAG	MMSVKPKDFKHEICVYLEGIGECLVCFDILTPGDELDPDHSDSYEIDFSVFDENDKHITYDISRKQYNHCENKAMDEMLEITTQWHKEWESV*
Ga0104988_1025816	F029673	N/A	MTKAEMIQHLRMVAVSENTITGMSNAFDLGAEHERDVVSSIIFNMVKDQHLAQNIVDTIRVRE*
Ga0104988_1025817	F015570	GAG	MNDKLDQAFDELEFNVNVTEEMRKAKYLAEQREVATGVTDGTAQRNLVRDLTENLRTLPTSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKR*
Ga0104988_1025818	F024504	AGGAG	VNRKPIGVEAPYRKPDFTFQDMLLDRIKVLEALVAKLEQRIRVLEGK*