Scaffold Ga0104988_10203

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10203
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11902
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (70.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F009066	Metagenome	323	Y
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y
F031026	Metagenome	183	N
F043823	Metagenome	155	N
F072095	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1020310	F009066	N/A	VEFAVTPEHEKHLAGILRDLTRDLDAKYRKGQDQHGGALWRRPVWKDAWEEILDLCTYVHTLKMQLSVIAEIALIGASDESVVAAQSRESCRQILAVLEGFPSAADKK*
Ga0104988_1020313	F043823	N/A	MFSVKKVKTNLTIDPKVKRNGERLAKKGGLSLSAFITTLLVKELAKENRR*
Ga0104988_1020319	F072095	AGGA	MIRDLEQEGVLPAPASSYGSSALSMTMALIDLQAKNKELRNRLERIEDILKGLIEKQGASL*
Ga0104988_1020325	F016963	GGAGG	VIEILPEQTTHEQLLNRVRSLARELAEAKAALAAAEGRENDLIDRIRAGL*
Ga0104988_1020326	F005502	AGG	MRTLLSILALFGLSTGKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVMK*
Ga0104988_1020328	F020510	AGGCGG	VSLQDLLTMFSARVICTYTPEQYAEQVIIARNNRMRWGMGQW*
Ga0104988_102036	F006891	AGGAG	MSTDQVAELSERLSLVRESIARIETRQSVILDLLERSQASLGEYHGRLNNIEREAHTIKTKLWLVALVSGAVVSAAWEIIKRRFGY*
Ga0104988_102038	F031026	GAG	MPGGRIALLLVLSLALASCATTSQTQDGPPPSPDTISYFIYAWDKAERSNPPCPQAYRDLFAESLKALSDSLAETERERARQ*