Scaffold Ga0104986_1960

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1960
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 61750
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (73.12%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002098	Metagenome / Metatranscriptome	593	Y
F010016	Metagenome	309	Y
F016267	Metagenome	248	Y
F038087	Metagenome	166	Y
F046241	Metagenome	151	Y
F051701	Metagenome	143	Y
F061801	Metagenome	131	Y
F066456	Metagenome	126	Y
F096871	Metagenome	104	Y
F100665	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_196019	F010016	AGGA	MKKTAQNDITGDWLQSKPNNEQFEKNWDLIFGKKRKEVLPEYELNKSTGEVQKVDNGDTTNSQK*
Ga0104986_196025	F100665	AGGGGG	MAKPYIKVVSIKDTKQGDCKLTLDMNQAGREVILQAGIQTALADYMVANTGKLSLWKRLQICWSILK*
Ga0104986_196028	F096871	AGG	MWVFQLALISGVMVGLELKFLEEEAPYTFSLVIDLFIIRLILQKLKYVR*
Ga0104986_196039	F066456	AGGAGG	MGFHINVWNMPRIETYDNAKEVYASKTAVRGGDQSVRRIGDRYEKEKWLRKDMLDGIEVYTAGYYRTDLVRFYPTHKEITLGSYPSRSTQFFVEYVAGIHMYDFEHKRYVPAPFTRSPMVKNNQIECFIGSASRLHMNAHDWYKLDYNNEPLNHEQFEKPVKYRFDASQMRELRKPYKKLLKYADTMLKLNSDGLENDEKLSEEVNQYPNKLDLYADENKTYLAYYYLVRQCQHNRWHSSGYITYCNIGMIKRFLDKQIKIENPQVLVEVKPETNA*
Ga0104986_196046	F051701	AGGAG	MQVQINLNDDQADEVLVEALKSGYAVNLNFPEEPNFYEISQAFRTLLAYYMGDKECAKYLHAMAKVRKTYNAKRLVEANNGL*
Ga0104986_196048	F038087	AGGAG	MSKVTIVLSMPDHPVSRFLFDEYINACADANLMIRYEPYTSDMYAELNDKALEIEKKQALTELENEILNNVACVNGSCED*
Ga0104986_19605	F046241	N/A	MKSVQIVAPGHIHAVWPVVRGLLNTAIINYEYADYDVEHLKVLLVKEFQVLFVVLEDNNIVGAFTVEVITYPNHRVAHTTTMGGKGLFDKNTVSQYEEWCVSNGITKIRAYAQDAQARLFKMKLGLNVVTHVVEKTL*
Ga0104986_196051	F061801	AGGA	MKTKPIFKTQASPSYKGYDREIYLSEYTPINKEHYRRLRFCAVVSVGINIFLLLVMVIR*
Ga0104986_196070	F016267	AGGTGG	MSTERELAEHGIEIKHIQTDVDTLMEDMNELKKRLDAIESALNEIKGGWKVFIFIAGLASAFVSWVVTHWLK*
Ga0104986_196079	F002098	AGGAG	MAYKSGADGITKQGKTKGKNLGDTGPNVGIQNGPIKHTVGKLNADMKKMGRGLAKIAAQKRG*