Scaffold Ga0104986_1954

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1954
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 60849
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (71.72%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Associated Families: 16

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004793	Metagenome / Metatranscriptome	423	Y
F006261	Metagenome / Metatranscriptome	377	Y
F008607	Metagenome	330	Y
F011482	Metagenome / Metatranscriptome	290	Y
F014841	Metagenome / Metatranscriptome	259	Y
F027488	Metagenome	194	N
F029091	Metagenome / Metatranscriptome	189	Y
F041730	Metagenome	159	Y
F042308	Metagenome / Metatranscriptome	158	Y
F053995	Metagenome / Metatranscriptome	140	N
F057363	Metagenome / Metatranscriptome	136	Y
F068570	Metagenome	124	N
F072277	Metagenome	121	Y
F099272	Metagenome	103	Y
F102814	Metagenome	101	N
F103142	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_195416	F014841	N/A	MGEENKKPSLIDDALAEIGRIAFLDPSICTGWVLVSEWMGEGRKEYWTLTLADDDNPDWRHKGLVHHALATWEADDDIGFKDNSDKPKD*
Ga0104986_19542	F103142	GGAGG	MSLDYKEFEWGNRITSDQDSVDRFLHEGLVPQAPSVGDLHGAAEWLATYAAETAEEAQGWANVVAFLILTAESKEKRSALAKAKKKFAEEKGIPVSQVRINRNN*
Ga0104986_19543	F072277	AGGAG	MEVCVKCGVSIGQFEVFPEQVCVKCFAVEFEKEFQSALKIGRFK*
Ga0104986_195436	F053995	AGGA	MALVNRLSKGEVAVGALQVGSNDTVYGIEFGTVEIDPASINATTRGGTTFTLTGAATTDIIIVNPPSTLNDDLIFCGAAVTAADTVTVYLYNPTAGSINQAAATFSYCWIDTTA*
Ga0104986_195439	F041730	AGGAG	MALPSSLSTATIVGTYVDLIGNPVRGSLTFAPQTILKETTQNIIIMPVHIVKTLDATGSFTITLPVTSDTDVAPQPFIYDLTENFSGGRELQIALPLSVAGTTQNLADLLPAVDSATAASYVTTDQYQALLARYTDAEGIRVIVVDAEDYEANALAYATATTTAATEIASFTVKSLLLMGV*
Ga0104986_19544	F102814	N/A	MRERKPMAGTKPRDSQKQRLYDAQRLAGFYDTGEVMTIKQAQKFVNQVLSHKKTKKLFEQYRFQFSTFPSKIVVEAGSGNHATMRSRNWELVRLIRLTKAGRNKFIILHEIAHHITWGRESHGAEFADVLLQFTTRYLGKPNADRLANAFNVKRVRVMTKTKKARVPRKREITSAKLVA*
Ga0104986_195449	F008607	AGGAG	MADAIYSKVAEFMTDTVVFTPKASVDKYNKPTFGASNTNVTATGRLIYDTIKSKDVQGTEVVDIGRFITNGPQTTITVGHRMVVGADTFSINAVDNIADENGAHHTVIRFGR*
Ga0104986_195452	F068570	GAG	MAETQQPMSSSDAGNVTGSSSRAQRARGVSAVPVVNPKINQDEFVSALDELVGVWKVQDGCSVRRITNELPEPARTKFKEAMKNEKINSARLVELLATFDIAVGSDVMRRHRRRLFGKDGCKCPIEH*
Ga0104986_195461	F006261	GAGG	MAVLSSGYTTTEPIQIVNPAEWSFTAVESPTIRVTQLRVQQPLNSSIVESYGVFKPLGASKTIVVATSIYGIDGSYEFTTQGETEWDDLYPVLTYQGILHVHDPLGRQKYVRFVDRTWTEVGDIDNLIRNAKVNYYEVEAP*
Ga0104986_195464	F057363	AGGAG	MDKKLQAMLASYGRSFLAAVTTAFMITGGDLLALDGDSLKAILAAGLAAVLPVAIRAANPKDPAFGKIADGVTETVVSKLTKKAPAKKATDKK*
Ga0104986_195466	F011482	N/A	MATEEIQPTLGEVMRRLDDLTMEVKQMNLNVGQTYLRKDVYDADTEKFAQAMEHITDRLEKMESRSEWVIRTVGGLFIMSVVGASMYVGQIIGI*
Ga0104986_195470	F027488	GGAGG	VSIRWITKVWSDSPYDGTRLLIHLALADISHDDGRFFASQKMLASKGRCSVEYVRKVINQMVEEGHIKIISKGNSRGKATTYQLLWKKLPNSVGEALPIEDDELPNSDTLDSPTLEVSLPNSTPQHPSYTPVLSTTKSDETAIAVIALAEVVARRWWEKQRVKPLGKGAWHSLLQITKAAEARGYSEQQIELALDYIGTVPTMRQMDLVLRGVGIKTKHETGAIRAIELSEKLRHETS*
Ga0104986_195483	F042308	AGGCGG	MGWDVTQVGSNISTKKFINWYLKTTYDGVYEPVKVFEGKNVGGQKAFYVALKKLDDNSIFACVFLTRRKNGSMAVKVMGESEQPYYYEAPKSFINVLTPAKTLEGAWWRNRCLEKEVA*
Ga0104986_195485	F029091	AGGAG	MAQKAVKKIGQYRLYKVEGYGIYEIYYGTKETGVHVENIANKENFEWAVGEIKRATQQAVREEFGIGVSN*
Ga0104986_19549	F099272	GAG	MGGKEMKCYTCGSELRLTMVKGKTYCFRCEVDASMEQYGIIRQTKERSAS*
Ga0104986_195496	F004793	GGAGG	MTIEEAKKIVGNQPTWALKNMVKALQMLPALNTAEDELNLRAAKIVLKERK*