Scaffold Ga0104986_1886

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1886
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 39771
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (84.62%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001094	Metagenome / Metatranscriptome	780	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003784	Metagenome	468	Y
F004110	Metagenome	452	Y
F018135	Metagenome	236	Y
F026830	Metagenome / Metatranscriptome	196	Y
F031792	Metagenome	181	Y
F083901	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_188625	F001094	AGAAGG	MNKDKLSAIAATYLRAGIASVIALWLAGITDPKALATAGIAAIAGPLLKVLDPKATEFGRGSK*
Ga0104986_188635	F026830	AGGA	MVRGEEVMPIPEGEITTAEILVPEVVPVEDEVIISWEEAKDDLSKLP*
Ga0104986_188638	F003784	AGGAG	MYEQKRMGKNVTDFAAYGLSDLAAGLPKRDGSNKADTNPLADHPAVIGYRESGVSTDDLVSFIESFASLRASRVRQVGHDQYAIANGQKFESFGASDTIRELIEELADASNYIDFLAIKLLNLTQIMESKLDYCD*
Ga0104986_188639	F004110	GGA	VTDLDKTAYELAHSVASTIYRRYNSYTERSDIEQECITWALSRSSYINFQLAETDTDKRKHNEQRIAWQMRRVAERYARKEKAVKSGYLVNDEAYYESVIVAQLLPFVIASIQNNTVIEVAQHMVQDGQPKGKSSPAEGGNLLAMLIDMKKAYLLLEVGDQTLLRLRYFESFTLQQVAQYLECAISTADRRCDKSLRRLIDLLGGASPFK*
Ga0104986_188644	F083901	AGGAG	MTKQVSGKQAITYRNYRRARDRALVRLAQLYPDTYKQLLVIERSFDEQEGKKWVGIDGLSNLTVGTHTRANGANAHVHTADTPQNKSNDGGEA*
Ga0104986_188645	F001477	AGGGGG	VSNIYTIHPKKSPLILLYEVVDEEGRAEWGGNDPEQCLQWLYLAPTGSRVLVSGWESDEEDAHLVGQSLDITALIVQALGRSL*
Ga0104986_188647	F000821	GGAGG	MNEEYLAAKANLCLNQAVEDLKQEEIAKAIKNLERANSAMSRLFGLEEEAKDE*
Ga0104986_188648	F031792	AGGAG	MSYEPELNDPVFYGVEEEVEPIKCFRCSDELDEEEIVWADVEGQIVKEGNDTAWCVSCLPSEGDSNE*
Ga0104986_188652	F018135	GAG	VKEMTIERVKHSGAYVISQIAGEGRNAYLFTRTYYGYTLAQAKAQFRIAIEGEVA*