Scaffold Ga0104986_1853

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1853
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 36910
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (40.43%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004206	Metagenome / Metatranscriptome	448	Y
F007030	Metagenome / Metatranscriptome	359	Y
F010533	Metagenome / Metatranscriptome	302	Y
F015720	Metagenome / Metatranscriptome	252	Y
F022396	Metagenome / Metatranscriptome	214	Y
F034152	Metagenome / Metatranscriptome	175	Y
F053148	Metagenome / Metatranscriptome	141	N
F102858	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_185311	F022396	AGAAG	MNVGSNRQLAGENGGRYITASNGTVSGNWMEIHAVSTTILGSCTSNITDLGGGVTIQAGDSINGVFTSISISSGSLVLYNRKWA*
Ga0104986_185312	F034152	N/A	MRLGLGLGLGVDQPISSNGGGADLPIMRRDLLREDEGFLLLEDGVSKIVITFGTFDSILCENSNFLVQEDNGKLIIQAN*
Ga0104986_185317	F015720	N/A	MKNTKTTLAGIGAILVAIGGTLKAIFDGDPATSVDFTSTIAAISAGIGLIMAKDASEKLEIKKPE*
Ga0104986_18532	F053148	N/A	MEAPHLVKIGVQRGWLSYPKDMAFKADGTPDPVIEAEPEFTEQRHTPDLARKAYVLRDRGLSLNDVAAACQVPRGSVVYLISKGHELFLASQRKDIVP*
Ga0104986_185320	F010533	N/A	MRTVTYDYVLQRACELTGRVFSTLTTEESNFFRTFISMSLRSAWECFDWPEQTVYQQEFFAPNYSDAITYTQGTVVYYPVEQKYYQYVGAPNSEVPPTNNGPNGALNSQCWGLAQSSYSGNANWNATTTYTVGTIVLYPVTQEYYQLFNTAAAGTLPTNTSYWGRLNKFLRNISQTTNVDGTTRAIPIGETFSVWPIDPRVTWRQQEAPYTFTDDGILITADLPYVWLEFRKTPPLLSSAAEATAYAFPYRFCEICSLKAAGQMLRVDGKIDLGNQFLELGEAELTKEIDKVALQEKYVRQIIVPSR*
Ga0104986_185323	F004206	GAG	LINQITDYLLRKLPDSFKGWTREAVEDYVLFHVQQGTLKIATQDDQVVAVLVGWRQMGPEPKPWTWQASDPNGDHWYWHQFAADCAVFAMAVAAKFFHDRPEAAILPAIGYRNGKLTTYKKGSMPIYRVASKMI*
Ga0104986_18533	F007030	N/A	MYAYGGMSSACIMSWVDLTAKFSWSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWIQLDHDIEFDASDIIHMAELAHEHQATVCIPYPCRTVPPRPALRPKAEHLQALKHQVSDAECAAELVPITMFASGCLAIPRKCLIATLDALGGSGVQYPYKIDWCDDVRVERFPTLWMPFAMEARPGKLEYLSEDYAAAARMTLAGVQHFSMKPKMQLNHWGEYPYSFKPYAG*
Ga0104986_18537	F102858	GGA	MKLTDEQLSEALSVSEEHPVLKAIGQILDDTLRDEVHNAIIPSLSAEDRAYNSGRAAAIKDLIAQISALRNEKELTSGQF*