Scaffold Ga0104986_1752

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1752
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 28664
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (82.93%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006696	Metagenome	366	Y
F025942	Metagenome	199	N
F052465	Metagenome / Metatranscriptome	142	Y
F055667	Metagenome	138	Y
F071151	Metagenome	122	Y
F078404	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_175213	F025942	GGAG	MNESWLARNIQPVTVVFLLFSYFFFALLSVFEMETRGAYVDLLGQAMIIVITAIFAGKTAERIVDIRTNKGAPDGP*
Ga0104986_175219	F071151	GAGG	MNCCNANGQCEQGKDCPVRKQRIKEINDAYTNGFKDAQIDDPIDDLAHTFKGLITLLTVVLGLWITYLIIWGKP*
Ga0104986_175222	F006696	GAGG	MKFFKFLKDYWRDLTPAEVIAKELAQAHLDRLEAEGAVEYAQAVLDLNLTRIERLNTRLKEYK*
Ga0104986_175223	F052465	AGGA	MLNNERNTLKRVSMLERLHQRYNTLRVARERLELLKEAKLP*
Ga0104986_175233	F078404	GGAGG	MRQHYKPEPVARPWADMLLAVSIGLILAAILLEYL*
Ga0104986_175239	F055667	GAGG	MTKSEKREVAVTLKMQHFGANYVARALSALYRSARSKKSQDEIMAIALAYGVVNNPEFIA