Scaffold Ga0104986_1727

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1727
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 26290
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (60.98%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003964	Metagenome	459	Y
F006139	Metagenome / Metatranscriptome	380	Y
F009743	Metagenome / Metatranscriptome	313	N
F013988	Metagenome	266	Y
F016523	Metagenome / Metatranscriptome	246	Y
F031084	Metagenome	183	N
F036685	Metagenome / Metatranscriptome	169	N
F048950	Metagenome	147	Y
F053986	Metagenome	140	Y
F054008	Metagenome	140	N
F091978	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_172710	F031084	N/A	VAIAKAKPGVPGATDYIGNADGPAPKPRPGMDEWIRQAIRYANGSLWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRDMPDDRGKPNGRQLSKVFIEACVANANELGVQMVIDYWPQPYGRAWRCDRMAWQVYSKETVHGAPGGDWWHVEITPKMADNPNLVKAAFLKVFEGIPA*
Ga0104986_172718	F036685	AGG	MRVKLRVDLKDGRGPREMVTNMLAIVEWEKIENRRSADGKGIGFADMCCWAYVLAKLAGDKVPGSWREWVAEHPDMEITPVEEIIDETPTTAALGDAPSLKS*
Ga0104986_172720	F016523	AGGAG	MYVIVSPRIGTPGDKYEPHDGINVDALLEGGLISTDKPKKSSKVKAEPVEEK*
Ga0104986_172722	F013988	AGG	MATYTVTHKYLIDDYAVLQLLTPSEVTVGGAIVVTGVDATFNGSYTVYALPQYLYLGVDSEGDLLYDYQVPIQNQVLYAKTADDVERTAATGTLSFTPTCTWITATDIEDWIGIGTATAGDAAFLTICASAANAFCYRRRVEAGYIDSLTTVPSQDVKLGTIMYGGALYRQRGSIDQYASFDGMATAPVVGLSGMVKQLLGIDRPQVA*
Ga0104986_172727	F048950	GAGG	MTLDELISAIERLQSIYDRMNEDDQREAKQCVRWAIKHLADKTYMASL*
Ga0104986_172730	F053986	GGAG	MSEGVAWNQGELSEETRQMIMDSNPMMKHQMAVFNLLDEIARPTHVPRKHRDDHLIRGLRNMVIDFQLSGNDDYAECVILAIEELGGQVKPD*
Ga0104986_172734	F006139	N/A	MATEIVVSLIGGCFLVLVALIGKIGSDNKKDHGKVHQVLGRIEQKIDHHVDNHK*
Ga0104986_172740	F003964	GGAG	MSEVTATIEIAGLKDALKTLNKIDKKLRVEITREYRSIAKPVITDATNLIPTNVPLSGMARNWTTKSGFKMLPWELGHKQKIAAKINTRAIKEYAGRTTNVGTFSIVYQSATGTMFDMSAQGRLGAALTARYGSRSRVMWKAWQQNESSVNSEMEKLVKRVMDLTSKELM*
Ga0104986_172741	F009743	AGGAG	MKIKLQLKRTEDATPEYYWTNLFVITEWERLERRNIQQLSSQPLYSDYCCWMHTILKIKGEQVGDTWRDWISKNPDIDILPVLDETDTNPTDAAPTAAN*
Ga0104986_17277	F054008	GGAG	VNCTICHYPISWPDIQGRTHFVCDGRVPKRTDVTPYGQAMQISQAVADAKWTPFQQRQVDDAIEACAKQLGVFTADDVWARLGQHFPVTKGLAGRLNAAVRRRIIVNTGNVRHANRGGQHDHAQRLTVWASA*
Ga0104986_17278	F091978	AGGAG	MMANNFEPISATDRHAQAIRDIVDTIFNPHSDIVRRLRTLRNAMTLCDPAPLYDIETLEKAITALERKL*