Scaffold Ga0104986_1723

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1723
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25950
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (66.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004111	Metagenome / Metatranscriptome	452	Y
F005175	Metagenome / Metatranscriptome	409	Y
F006218	Metagenome / Metatranscriptome	378	Y
F011150	Metagenome / Metatranscriptome	294	Y
F031850	Metagenome	181	N
F034179	Metagenome / Metatranscriptome	175	Y
F051076	Metagenome / Metatranscriptome	144	N
F096865	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_172315	F051076	AGAAG	MAGRPSKKIFCMDISRLSGKPCQAKGFPTNKFNKNGFQIYKCRFHGAQNTNFYGFRDRANRGGFNKPGYSDEKKIKSLASLKQFRDKDLDYVRQYYYQKAKPRVDSLGRYNSKYSTRAAIRRKNTSKYKEGRNITDQLEQVLSILESRKQQGNQGKD*
Ga0104986_172318	F005175	N/A	MIDKELHVEDVIEMYNEKILILQKEIDRLNLEIECLNIELLKARSNKHIESEN*
Ga0104986_172323	F011150	GGA	MDINYYNKEHEKIRQQFRHDAIMRQLKKREDKLFRDMFIKMFLIITIFVLLVYLIAR*
Ga0104986_172325	F004111	GAGG	MKEKIKQVNELCAANGTYLNQHGKKTVSAWSKIKYFREIFGTEFGINCVIQEHSDRYVIMKCIITKSDPEHIISTGFSKQYRDKPGYLEIAETFAITRALSFFGICLEDLTSKEEYEELGIPVQPMNDKGIGPTKFDSNTINELMKKVHYAPHTAKLDFLWRANRELLDQIKIKDLATYNSILNRFNSKRDEITTQNEV*
Ga0104986_172332	F006218	N/A	MVKKKVILKSCGFCHICNKEHMSNEGGWVINAEKLNFCHSLEHSCYEIYFNNVRAEQKQSLVNNNENDKRMQMYIEYLKTKKCRHKYQGEM*
Ga0104986_172337	F034179	N/A	MSDDIVTMFAQAYSKKKPTLLAQQGSNIKVKLKKKNGKKKS*
Ga0104986_17235	F031850	N/A	MHQDDEDFYNTNVKAVVFIEKDNSITVKFTGFENKEHSAIFSSWLMMLLNIENAIINDAKSKAIH*
Ga0104986_17236	F096865	AGGAG	MNREMLSEASTNWDVYIKECLEVATSSITPYKIIPYKNGKGIKQAIVEKQIKEVA*