NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1719

Scaffold Ga0104986_1719


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1719 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)25775
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (78.72%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004344Metagenome / Metatranscriptome442Y
F009529Metagenome / Metatranscriptome316Y
F020909Metagenome221Y
F024097Metagenome / Metatranscriptome207N
F025466Metagenome / Metatranscriptome201Y
F054668Metagenome / Metatranscriptome139Y
F058137Metagenome135Y
F096878Metagenome / Metatranscriptome104N
F101146Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0104986_171918F054668AGGAGMGISTRQVTVTTSPTALVDATQEAEMVYLHSSSGQCFIGNSDVTTATGYRMDNGDKLTIENKANGIWAITSAGTVTMMVLAIGK*
Ga0104986_171921F025466AGGAMMLDKVKIEAVVKTYLRAAVAAVAALYLADPNQPVKNYLVAGLAAVAGPVLKALDSKSTEFGRGSK*
Ga0104986_171927F058137N/AMVGKKVRSVRVSDQLWARAMAKAKSEGKSVSEVIVDFLKGYIK*
Ga0104986_171928F020909GGAGMITKRGKKVRAIAIAVGIILIWQIASNLWWVGIDSPNAEFLGWCWGSMSECVVL*
Ga0104986_171933F096878GGTGGMNREPLFSVHNSLNGDFVIYLEERDANLDVVEDILAAVPLVQLQGIQSLILHDLKSIESARLMDKARSAVPDLAIKLASISESEALTLAEQLITAVKFARAMRSQPVATKLELVK*
Ga0104986_171934F024097GGAGVANPNGRKGALFETSVMKWLRERGVSAERLSKAGSADEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAHNYAVARGLEQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE*
Ga0104986_171946F009529AGGAGMNCTICDRATKHEGACLTCELKVKACLTELPALQYEAGNHLAPARTGSGAVSSERSIGINVNALDFSMATDLLHIMHGWEVPIRIGRGLTPPAFVDREPTTDAEVDATCSFHLTHLDFTLLQPWAVEFASDVYGLHAKGRAAAKKFSEQARRIPCPTDECKRFVVIDVENLSDEVSCFGCKQSWTVARLVKLAMSNPNRKFFLDVEAISLWLKISQREIYRIAKRHDIEKRGSLYNFGDILKVVQL*
Ga0104986_17196F101146AGGAGMAYTVISDREVCGKKKGESITDKELVDAGVSAQALTAANHIKASNAVSPSIKPATEGVTN
Ga0104986_17199F004344AGGGGGMDGLSIKIVTNDDVEKVYSLRPRIIVDFEQKYNKGLAKLIGEEQKLEHIYYLAWLALKHNGNIIKPFGGDFLDSLKEVSLVADPNSESTETA*

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