Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1719 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 25775 |
Total Scaffold Genes | 47 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (78.72%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004344 | Metagenome / Metatranscriptome | 442 | Y |
F009529 | Metagenome / Metatranscriptome | 316 | Y |
F020909 | Metagenome | 221 | Y |
F024097 | Metagenome / Metatranscriptome | 207 | N |
F025466 | Metagenome / Metatranscriptome | 201 | Y |
F054668 | Metagenome / Metatranscriptome | 139 | Y |
F058137 | Metagenome | 135 | Y |
F096878 | Metagenome / Metatranscriptome | 104 | N |
F101146 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0104986_171918 | F054668 | AGGAG | MGISTRQVTVTTSPTALVDATQEAEMVYLHSSSGQCFIGNSDVTTATGYRMDNGDKLTIENKANGIWAITSAGTVTMMVLAIGK* |
Ga0104986_171921 | F025466 | AGGA | MMLDKVKIEAVVKTYLRAAVAAVAALYLADPNQPVKNYLVAGLAAVAGPVLKALDSKSTEFGRGSK* |
Ga0104986_171927 | F058137 | N/A | MVGKKVRSVRVSDQLWARAMAKAKSEGKSVSEVIVDFLKGYIK* |
Ga0104986_171928 | F020909 | GGAG | MITKRGKKVRAIAIAVGIILIWQIASNLWWVGIDSPNAEFLGWCWGSMSECVVL* |
Ga0104986_171933 | F096878 | GGTGG | MNREPLFSVHNSLNGDFVIYLEERDANLDVVEDILAAVPLVQLQGIQSLILHDLKSIESARLMDKARSAVPDLAIKLASISESEALTLAEQLITAVKFARAMRSQPVATKLELVK* |
Ga0104986_171934 | F024097 | GGAG | VANPNGRKGALFETSVMKWLRERGVSAERLSKAGSADEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAHNYAVARGLEQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE* |
Ga0104986_171946 | F009529 | AGGAG | MNCTICDRATKHEGACLTCELKVKACLTELPALQYEAGNHLAPARTGSGAVSSERSIGINVNALDFSMATDLLHIMHGWEVPIRIGRGLTPPAFVDREPTTDAEVDATCSFHLTHLDFTLLQPWAVEFASDVYGLHAKGRAAAKKFSEQARRIPCPTDECKRFVVIDVENLSDEVSCFGCKQSWTVARLVKLAMSNPNRKFFLDVEAISLWLKISQREIYRIAKRHDIEKRGSLYNFGDILKVVQL* |
Ga0104986_17196 | F101146 | AGGAG | MAYTVISDREVCGKKKGESITDKELVDAGVSAQALTAANHIKASNAVSPSIKPATEGVTN |
Ga0104986_17199 | F004344 | AGGGGG | MDGLSIKIVTNDDVEKVYSLRPRIIVDFEQKYNKGLAKLIGEEQKLEHIYYLAWLALKHNGNIIKPFGGDFLDSLKEVSLVADPNSESTETA* |
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