Scaffold Ga0104986_1719

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1719
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25775
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (78.72%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004344	Metagenome / Metatranscriptome	442	Y
F009529	Metagenome / Metatranscriptome	316	Y
F020909	Metagenome	221	Y
F024097	Metagenome / Metatranscriptome	207	N
F025466	Metagenome / Metatranscriptome	201	Y
F054668	Metagenome / Metatranscriptome	139	Y
F058137	Metagenome	135	Y
F096878	Metagenome / Metatranscriptome	104	N
F101146	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_171918	F054668	AGGAG	MGISTRQVTVTTSPTALVDATQEAEMVYLHSSSGQCFIGNSDVTTATGYRMDNGDKLTIENKANGIWAITSAGTVTMMVLAIGK*
Ga0104986_171921	F025466	AGGA	MMLDKVKIEAVVKTYLRAAVAAVAALYLADPNQPVKNYLVAGLAAVAGPVLKALDSKSTEFGRGSK*
Ga0104986_171927	F058137	N/A	MVGKKVRSVRVSDQLWARAMAKAKSEGKSVSEVIVDFLKGYIK*
Ga0104986_171928	F020909	GGAG	MITKRGKKVRAIAIAVGIILIWQIASNLWWVGIDSPNAEFLGWCWGSMSECVVL*
Ga0104986_171933	F096878	GGTGG	MNREPLFSVHNSLNGDFVIYLEERDANLDVVEDILAAVPLVQLQGIQSLILHDLKSIESARLMDKARSAVPDLAIKLASISESEALTLAEQLITAVKFARAMRSQPVATKLELVK*
Ga0104986_171934	F024097	GGAG	VANPNGRKGALFETSVMKWLRERGVSAERLSKAGSADEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAHNYAVARGLEQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE*
Ga0104986_171946	F009529	AGGAG	MNCTICDRATKHEGACLTCELKVKACLTELPALQYEAGNHLAPARTGSGAVSSERSIGINVNALDFSMATDLLHIMHGWEVPIRIGRGLTPPAFVDREPTTDAEVDATCSFHLTHLDFTLLQPWAVEFASDVYGLHAKGRAAAKKFSEQARRIPCPTDECKRFVVIDVENLSDEVSCFGCKQSWTVARLVKLAMSNPNRKFFLDVEAISLWLKISQREIYRIAKRHDIEKRGSLYNFGDILKVVQL*
Ga0104986_17196	F101146	AGGAG	MAYTVISDREVCGKKKGESITDKELVDAGVSAQALTAANHIKASNAVSPSIKPATEGVTN
Ga0104986_17199	F004344	AGGGGG	MDGLSIKIVTNDDVEKVYSLRPRIIVDFEQKYNKGLAKLIGEEQKLEHIYYLAWLALKHNGNIIKPFGGDFLDSLKEVSLVADPNSESTETA*