Scaffold Ga0104986_1655

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1655
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21236
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008183	Metagenome / Metatranscriptome	337	Y
F009393	Metagenome / Metatranscriptome	318	Y
F093537	Metagenome	106	N
F103122	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_165514	F093537	GGAGG	MATAKIKDRYMTIRLPADVERELRKMAERNTRTLAAQILHCVKMEMERQQALEAKA*
Ga0104986_165525	F103122	AGG	MMTLEQIRNALSDRMPIKVAEATGVHYNTIRQVRDNPNANPTHKVLLALSNYLESRKVTHG*
Ga0104986_16556	F009393	AGGAG	MSGNSQIAFAPLGKTIVVAAAAVAPAGIQAPVFVKFDPQNAGQYRVINAGTTTVFLGTGPNATDATANAVAPVAGTPSAAIVLVPGAVEILRFNQDTYFSGLSSAAATVYITPGQGL*
Ga0104986_16557	F008183	AGG	MLETDVMAVEGNEIDLVKYGVLWQKVQDMDKKMDKVERQLEELVALANKGRGGFWFGMTVVSGASALVGYMLNYFKH*