Scaffold Ga0104986_1648

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1648
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20923
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (71.05%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030689	Metagenome / Metatranscriptome	184	Y
F033721	Metagenome / Metatranscriptome	176	Y
F035221	Metagenome / Metatranscriptome	172	N
F037622	Metagenome	167	N
F039993	Metagenome / Metatranscriptome	162	Y
F039994	Metagenome	162	N
F091592	Metagenome	107	N
F096882	Metagenome / Metatranscriptome	104	N
F098923	Metagenome	103	N
F102824	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_164818	F098923	GGA	MFFYEEIDRRHIDALADILEDSDVAPGKLMGNEAGPLAWIMNQMLYDKFHGHGWELDLLTGRFIQTGE*
Ga0104986_164823	F091592	GGA	MISAQFTRGDQDDRIKQLAGEVAIRAMQDIRLLQRRGVLDGLRVTKNRIGKLSDCNCYRDVKEVRSLVRDIKNGTVLFWCKVAGAMIDQATLNRVIKRGIKNVN*
Ga0104986_164824	F102824	N/A	MTPVRVQREDGKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFDDKGKAQDAANLWNAYAIWCQDRSGKRKRR*
Ga0104986_164826	F039993	N/A	MKLVLAWICYWIGDLISITIMRYGYGYSLYNKLMLLSSDLDDNGVIWK*
Ga0104986_164827	F033721	AGGA	MRWIKKEIDEDGKTGWAVYYDETGEGNQEEWKHRDTYETREEAVAACRIFEWEDYDCNDK
Ga0104986_164828	F039994	GGA	MENPPTISEMGDAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPCPDESEENALDHLERAVVRALFAWMQLKKGLPRL*
Ga0104986_164832	F096882	AGGA	MAHNKRSVNQSIKAWRALERALNDLESFEACAKWVIDNPHISKKLSGAGLMAVMAEDLKKKKH*
Ga0104986_164834	F035221	N/A	MYGCNTQTFYMKRILIAMAVLVAPVMGDDFAGGVYDSGNAVFSGGKGLAITSNGLIVDNGILKLTPNGCYSSCGDVYYGGNEIVTKTGYLYYGSNGTKVQCGEYYSGTAGSTYVFENDSE
Ga0104986_164838	F030689	N/A	SQARTGAQQAAFQNYVQANQALPGQFGQAPSTAQPFYQAVDQGIPVNLTNTFANLYGSMADYQARTYGAYTAAKASQPTGAQQFGAIASGIGSLIPNISI*
Ga0104986_16486	F037622	AGGA	MTKEQILKEYFSAMGRKGGSVTGPTKARKLSREHYQTVAQAQRERWDKWRLENGRTAIKRER*