Scaffold Ga0104986_1647

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1647
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20835
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F000506	Metagenome / Metatranscriptome	1070	Y
F024063	Metagenome	207	N
F083918	Metagenome	112	N
F100682	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_164714	F100682	AGG	MPVATAEDWIKQNKLRQEWLAANPDATYIGWTSI*
Ga0104986_164716	F000141	AGGAG	MHTRFKCNGCKRDTEFLWLDQLDTPEGFKAYQCMDCGCVGIKNVVEALSIPDSAICRCDKCGSWKFEAVVCHTCQLIGVK*
Ga0104986_164717	F083918	GGA	MMGYVEIIDGSGYLARLENDQITIESTDDKCMACNDDRLIHDGNYLVCTQCHCRQ*
Ga0104986_164721	F024063	AGG	MPVPQNMCAQIGLQMTMEIAVYLFIGLSMAYWLVLMRIDDMKQAHYWRGRKDGFDMHRRMIQNKVKTDEVFDYDKN*
Ga0104986_164733	F000506	AGGAG	MAKLKITRANGEVSEHRITPGIEYNFEQKYGSGISKVLREHERQTEIFWLAYECLRRAGAQIPVWGIDFIDSLETVEVLDDEKK*