Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1638 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1638 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	20519
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (78.05%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

20519

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (78.05%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F010016	Metagenome	309	Y
F023292	Metagenome	210	Y
F038087	Metagenome	166	Y
F066456	Metagenome	126	Y
F096871	Metagenome	104	Y
F100665	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_163815	F066456	GGA	MGFHINVYNMPRIDNYAEAKKEFDSRTVIRGGNQSVRRIGDRYEKEKWLRKDMLDGIEVYTAGYYDTDLVRFYPTHKEITLGNYPSTSTQYFVNWIGNVHISEFEHKRYVPAPFTRSPMVKNHQIECYVNGGHCMNATDWYKFDYTNTPLNIEQFETPVKYRFDASQMRELRLPYKKLLKYADTILKITNGEGLDKDKELDEQLSNYSLGYNENVLQLCADEDKTNLAYYYMLRQCQHSVWQGYNGSSSNYKYKCNIGIFKRYLDKMIKLENPQVLVEVN*
Ga0104986_16382	F023292	N/A	MGHFSILTSCHGVTMSLDQVKEVVRVQVKNYRVADILDKFDDSEWLTLYEQVMRYKPYETERRLIDWARHELDFFRRVLYTERHYIDMLIDKACIECLMCEDRATDERRHHGKRPKNT*
Ga0104986_163825	F096871	N/A	MWVFQLALISGVMVGLEIRYLEEEMPYKVSIVIDLFIIRLILQKLKHVR*
Ga0104986_163829	F100665	AGGA	MAKPYIKVVSIKDTKQGDCKLTLDMNQAGREVILQAGIQKALADYMVANTGKLSFWDKLKICWSILK*
Ga0104986_163833	F010016	AGG	MKKTARNDVTGDWLQSKPNNEQFEKNFDLIFRKKKPSDDVSPHLYEYELNKSTGEVQKKED*
Ga0104986_16385	F038087	AGGAGG	MSNKITMVISINSDTVSRFLFDEYINACADAGLVVRYEPYTRDMYAELNAKALDIEKQDALASLEEEILNNKACINGSCED*
Ga0104986_16388	F006587	AGG	MMDNKYEGTGFVVVGFIIGCCLTWAVMQYSHTQKKYSMNLKCIQGELYEEIRPNFYVKSHLECFEQRTF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1638

Overview

Ecosystem & Geography

Associated Families

Sequences