Scaffold Ga0104986_1556

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1556
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17436
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010688	Metagenome / Metatranscriptome	300	Y
F016803	Metagenome / Metatranscriptome	244	Y
F020137	Metagenome / Metatranscriptome	225	N
F061810	Metagenome / Metatranscriptome	131	N
F074803	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_155612	F074803	N/A	MIKIELTPQQFNQLYELLVIGMKAGNVNNMKVGIPLVETLEAAAKASQPTD*
Ga0104986_155618	F020137	N/A	MSVHPSNIEAAKLLREHWPTCSTWNDDQILNWIGIFSSKKLFGIVKNDEGKCVGVGAVRFLNSIEESEDLNNNFPNGHIAWIEIAIGTEPYAVQTLWMAMMRLCSKNVTKLGGLRKGINRLYDFDRYFKLIMNERISYGRII*
Ga0104986_15563	F016803	N/A	MINTLAKLRAAWTFTRHQRWVDPLPWSKPDAITLNNFFKSETGKKFKDALLNTVLMQNASAITDRNHLQYSSGFAMGQASLVKVIEMMADQESITGQEDDPDSATNT*
Ga0104986_15566	F010688	N/A	MRPKTATIMVIAVGPKGHHREIGGAPSHSACGCDEADNNAPMIAIPVEALSTDTEDGQQASPEVGDEVLLDDVRGILKKLENGEAYVEIKTVNGMPAEYENTGDDAMEAKQTMDEKGMRKMAMMHDGEMES*
Ga0104986_15569	F061810	GGA	LASSGSGGNVTPVDPPIMRRDLLQEDEFFVLQEDGTGKIVLSFGTYDRMATEQGTDLILTEASDKFILTVN*