Scaffold Ga0104986_1425

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1425
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14909
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (74.29%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015731	Metagenome / Metatranscriptome	252	Y
F038244	Metagenome	166	Y
F049630	Metagenome	146	N
F054028	Metagenome	140	Y
F061843	Metagenome	131	N
F064712	Metagenome	128	N
F077222	Metagenome	117	Y
F093846	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_142513	F054028	AGGA	MKLVPTTDKVTIQWFAVLHDGSKMRNNKGFIHNAWDVKCSCGWESKTGGAIKACVVREVEAHKYNAHDYTWKVGN*
Ga0104986_142514	F077222	AGGA	VRILWAVLTALVAIGKGRRPLPWAILGFMGGWVAFGAACLSRQRPLRPVPSWALNWGYRSQAKRAVAGIDTPKDLLG*
Ga0104986_142521	F093846	AGGGGG	MEIAVMAGAAALALVGAYFATILTNGSDDWAGQVKKAQRSRAKMKKALEK*
Ga0104986_142522	F061843	AGG	MSTTWSDVFKIFVGNDGSYNLYLEEQEACVDLIENISDEIEISDFAEMKAASRANLRDDKATLRLDNIRNNLPPMALKIAKLSERELLDLAQEIIQVVQDKNKVRLEIVK*
Ga0104986_142526	F015731	AGGGGG	MSVEIEKGVADLDSNTAAWLENYKGALAKIKEWQEVADVARSHIETSLGDCEVGMYQNRPVVRWSFVETRRFDVKRAKEILPQQVLDTLEVISNSRRFTIVEADNE*
Ga0104986_142534	F064712	GAGG	MSYLDFKPINCRACGKLIWAGNCSSGFYTKLDTPRLNIIEEITKKVNQIRTYEAHRTLISFEATPRIGAYVVGTVYKPDRVILAEHRCSTFTLFETDPPDYWNRKVNQKLDLEEIPF*
Ga0104986_142535	F049630	N/A	MKVKSSLAELPDLHFEAQMFITPGRSGSGKASAERSIGVNVAALDFSVATDLLRILHSWEVIIRSDRRLTPPALVPKERTIDAEVQATVDFHCSHLEWSLAQEWAVEFAGEVYGLHAKGRSAAKRFSEQARRIPCPTDDCKRFVVIDVENLMDDVRCFGCKQSWSVLRLIALAMSNPNRKFYLDVEAIAAWMGTTERTVYNLIKANKVERRGSLYDLSAIIKARNSTL*
Ga0104986_14255	F038244	AGGAG	MPISSSQVTVTTSPTLLVSGDGVAEGVYLHSKHTVYLGGSDVTSSTGYQMDNGDKLTINNHESPIYAIAGAGSGTMQVLVVTK*