Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1397 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1397 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14611
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (78.79%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14611

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (78.79%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F003522	Metagenome	481	Y
F006019	Metagenome / Metatranscriptome	383	Y
F011384	Metagenome / Metatranscriptome	291	Y
F030690	Metagenome / Metatranscriptome	184	N
F062685	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_139719	F003066	GGA	MKKEPVAWLYEEFDVRSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLVAGEPVEEYKGLSKYDSKRLVEANNGL*
Ga0104986_139721	F011384	GGAG	MYTKLDDQRQAKFIISYMETNPGCSIKSIVQQCVVCRTRLKYLESQGYFTLPKWTYSNELDRRFKNRHYVSVSVGREYGKWT*
Ga0104986_139723	F002037	GAGG	MNKVYLIFITVVAALAIFYTEKSFSQTTTILAPDGSVTVCQVGSNGIVICV*
Ga0104986_139724	F030690	AGGA	MQRSEVEIICNHMLGRVIVSCEALHGDSTIVITLDDDSLIEISGEELSIYGELTPMDD*
Ga0104986_139728	F006019	N/A	MTFITENNIANLYDTLIQFPVFDEYKLPPASKVDFVVVHDDTICGQYEPPEAGEPHVITISTAKCGHLDTVIKTICHEIIHMICYLESPKTEKYTSHKGLFLKLQKRVANTLGYDPKEL*
Ga0104986_139733	F062685	N/A	HIARHRTADIWKQKRGKNRDTYGMIYRAILEPICYVAGKV*
Ga0104986_13975	F003522	GGA	VNTRDKILAYLTEPKAIKDIAAHVDGNYNTIKNLLVTMKMEGHIHAFKDKDNRLMHYYIPQPHPLQTIFGHTANFTDDQIKGVQTYNADDAKHNLQQRTTQETYGESVAYTLTQYD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1397

Overview

Ecosystem & Geography

Associated Families

Sequences