Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1276 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1276 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	12984
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (80.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12984

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (80.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F026539	Metagenome / Metatranscriptome	197	Y
F042880	Metagenome	157	Y
F052570	Metagenome / Metatranscriptome	142	N
F053128	Metagenome	141	N
F079999	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_127613	F079999	AGG	VGYQGERGRESVKDIFELSFRWQDGAVQVIIYALVIYLGLVIISKITDKRKREGK*
Ga0104986_127615	F042880	GAG	MANYTTIGELIEHLKGEDLSAPIIYQYYLAEHFEISEEVFGQVARDFDSLIPCSDSYEVISREINSKREEANV*
Ga0104986_127618	F052570	GAG	MASKQLLLKIRVARIGVALSVWRRKLMRKMKYKLPKGVELVIDDYDAERKDRQDSAFYTWGGSHRVATLTYQGREYYVECIGEMRIHYKGDVLRYCDRLIEAGIKNDKDLAKIEENGGEWINNSWFEIYDESAGDYTGEVYHEVKDAIETVANWIIDKEAVNV*
Ga0104986_127622	F053128	AGGAGG	MNKGYFVIDNQGTGWKEGILWKSIKEIADSIRDYDDFIDNYEGENLSHSQVCQLWEFEYHRLTPANCVKYGIKPSDLQQEEGNE*
Ga0104986_127624	F002827	AGGAGG	VNKEYYQAKADLCRDLAIKQMVEGNAKEAGDNLIRMVNALNQINLINYKEEKGNE*
Ga0104986_127626	F005146	GGAGG	VKLINFYEVADRKGDTAWGGASESEAVEWFRRGLDNSIYVSVWNEEDIEEPKLVIDKINITKLVLTTIVSERGRA*
Ga0104986_127634	F026539	N/A	MTNIHPAILDIAPSVANSICRRFRNYVDKDDVKQECYAWYLTRVEHLDELLNETNPIQKVINEKRIAWQMKRHCERYARKEKAAKAGYRIGDEAFYDTATIAQLLPHVIASVIDNTVLEQAQNLINDGQPRKQSAPAEGGNLLATLIDIKKAYLKLEITDKDILIKRYHESLTLEAMAEYLGCAVSTADRRCQASLRKLQNNVGGESPYQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1276

Overview

Ecosystem & Geography

Associated Families

Sequences