Scaffold Ga0104986_1273

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1273
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12950
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (25.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022372	Metagenome / Metatranscriptome	214	Y
F035216	Metagenome	172	Y
F047567	Metagenome / Metatranscriptome	149	N
F050981	Metagenome / Metatranscriptome	144	N
F055532	Metagenome / Metatranscriptome	138	N
F068742	Metagenome / Metatranscriptome	124	N
F078382	Metagenome / Metatranscriptome	116	N
F083886	Metagenome / Metatranscriptome	112	N
F094923	Metagenome / Metatranscriptome	105	Y
F100656	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_12731	F022372	N/A	FMSTTITIDVAFLTTEQRDSATLLFARSGGWQATVDGEPNPVSAEDYGVTMIANYLRSGVASQSAYDAQIVAAQEVAELLEGVTVTTPADFPTPPIVTPV*
Ga0104986_127310	F035216	N/A	MIITYIIVSSIICTGAFAVGLGQRRERRRLGTMVQGAHIPHRLEQPISEIASLRMELSLRTLQLESERLESDRLRSIIRSTIR*
Ga0104986_127311	F094923	N/A	MNNHDPDLVARANRTMSCIRTMVRIILVTGILGLLWLLWRLWL*
Ga0104986_127312	F068742	N/A	MSYRFFPQNRNQTKQQRQKTMSNISISIDLKLIDQKKLKRMTRQSGAEAAFLDLIMIPTPGSPYGEYMVKQRSTKEEVEQKVQTPILGNGKTAVKWEGQ*
Ga0104986_127317	F047567	N/A	MIISLEKTHATKREATAMLAAIIEKITETTWMAATVHRVHMDPHELYEVVKVRNRWHIKATAQHLKAAKALRPKGYGV*
Ga0104986_12732	F083886	N/A	MLRNEIFGDLWRGAVGVAGSGLAVISSVHEDIDSMVKTAGMILGCLASLAMFVSLCQRIWHNWQTRKWEGVIFKNADDDLKK*
Ga0104986_127326	F055532	AGGAG	MSQPDLFGALPPPPRKLTNLDLAKIAFTEFREALRSSIHQPPSDPRQLIQLEDDVQFALTSRFGHGPKNPGQLAALCIRGVDVFMNHHWEDGTPGTNGICRRCKRISK*
Ga0104986_12733	F100656	N/A	MLSACDTPCPKPVPAVVSVSQAKSSTASASVAVRSAIEDSNGTTTEIKRIKSTQDRVDAKSILILKWLEFQR*
Ga0104986_12734	F050981	GGAG	MKWLAIICLSVSSVCAQITDDELSKISKEEIVLTIRHLRALTADAIATADRAIASEARVQASLTDATAALMDSQNQLLKVDQDIRNLQAQAEEQTRIAVGAKANAVKAQRLADHRGNLLGWLGAGLLCIVCLRLTSILPPPYGFLLPVAAIPAGYWLARLLL*
Ga0104986_12735	F078382	N/A	MRQTLDLLVVTLSMFLSRTLWITIGGLYVVWIVHWSDVATLYTLDNAAQIQSFTQLALCRYGLIGSIVLGYLGFTKGSTGVAGYVIDKLNPKDS*