Scaffold Ga0104986_1265

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1265
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12860
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F019319	Metagenome	230	N
F019644	Metagenome	228	N
F021759	Metagenome	217	N
F025023	Metagenome / Metatranscriptome	203	N
F040082	Metagenome	162	N
F041770	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_126511	F025023	AGAAGG	MTDIFEGRIMDVGTDRTCILLLQDDFDTLRPHQRALVKNVATECNQFGHSISIDQLKSLRRYSIGRGLIDLIMSDNFDELLITSICRSVQGVQFKSAGGAVGHLNADEAEQFATICRAIRNDEQPIEWNTSTDSFGFPKQKASK*
Ga0104986_126513	F019319	GGAGG	MTKKDIQDAIAFLEKMFVGVGDQDRLFNVIAALKEELARRNKK*
Ga0104986_126514	F040082	AGGAG	MTGDTFAMSQEIIELQTRVSELMVALERVTEQRDDAIDAAESLHQELEASRDRIKSLGGQLDRLRIHLQQGIEL*
Ga0104986_126515	F041770	GAG	MKTESVGADILLEAHQLVTGPRNETYGNVVDDYSKVIQIFEGFTGIKLSIADALLFMVSIKMARLRTNLDRNRLHHDSLLDALGYLGLLNQAYNDLPFPRTVAER*
Ga0104986_126516	F019644	GAG	MTMNEDQDPLDDRIKYFIESQVDADNVCTAYVLVATIQNYVTTEQKFFTICPPEQVTSTTIGLLESASAAEKLRIARQLLEDD*
Ga0104986_12652	F003378	GGTGG	VKIKQNATVAKFFDLGQRLFSLFLANALPAVTTGAVIGISVGKSAIMAGAMAVIKVVSALAEASTDGELSSEEIKAAFGKKK*
Ga0104986_12654	F021759	AGAAGG	MDAGLATVLAAAVATFGGIVIALMQLKGLRDENKQDHAIVQKRLDTVIDMVGKQGAKLTSHLDWHLTKEPTKDQKVKQVATRKKK*
Ga0104986_12655	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDTDPAEVQSVGFLLATSDGGKPDHVTLFQSRNEDSVDHVLHIPVGMVKHIKVLMDLETNSSDR*
Ga0104986_12656	F005528	AGGA	MRILTAILATLTSLTMSLGIAQAVSAPAQPSVAVIALQPLWQTDRLDPIQPIRYRHGDVSWLPSLAKQAGWPDQAIPQLTQIVLRESGGCPNRRGGDKVDKDCNITGVSEWNHRSDTGLLQINGVNYDLSRNKWAAICREMNICTQAPLLDPLTNLKAGLVLYNLSGFEPWNPCNWRDC*