Scaffold Ga0104986_1159

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1159
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11480
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009401	Metagenome / Metatranscriptome	318	Y
F012870	Metagenome / Metatranscriptome	276	Y
F014015	Metagenome	266	Y
F017479	Metagenome / Metatranscriptome	240	Y
F025013	Metagenome / Metatranscriptome	203	Y
F050367	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_115911	F017479	AGGAG	MKDLKTAAGSWARAFLVAVLSLAAAGVTEPKALIAAGLSSCLPPVIRWLNPNDQGLGIQK
Ga0104986_115915	F050367	GGA	MIINSLTILIVAGVGLIAYFSFRLGQEVGYDKGMVEGRTAIRRYYEQVQK*
Ga0104986_115919	F014015	AGGAG	VAEMVIFDNGTATVMGGELEEPQDIVIYCDLCNEPVAITPEANDQVFVTCLRCHAVSQINIKTTKEADAEPTPEA*
Ga0104986_11592	F012870	GGAG	MTDMEQWEKENEAFLAKIGQVKQAVSKPASTKKEEE*
Ga0104986_11594	F009401	AGG	MAKLKVTRADGVVGEYPITPLVQYGFEVWAKKGFHKSFIDDPSQTSIFWLAWECIRRSGETVPMFGEKFIETLIDVEVLDDDSPN*
Ga0104986_11599	F025013	GGAG	MTNVKFIEIENPEGITQTFAIIDRGNNEFTSMLKSTYDEMIAQSETSTL*