Scaffold Ga0104986_1010

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1010
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10073
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002044	Metagenome / Metatranscriptome	599	Y
F002357	Metagenome / Metatranscriptome	567	Y
F007469	Metagenome / Metatranscriptome	350	Y
F013618	Metagenome	269	N
F017290	Metagenome / Metatranscriptome	241	N
F037698	Metagenome / Metatranscriptome	167	Y
F055448	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_10101	F055448	N/A	NPASLDNIEQLIMSVLAVIPSGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTA*
Ga0104986_101012	F002044	N/A	MANTRKTTKRKKINRRVVRQTPEPLTKIDQHYMALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEDDD*
Ga0104986_101016	F002357	GGAGG	MAFNLEDYEDVATLNKWFIANYPMGRSDISVISHDPEKGYILVQATLWRDASDPSPAVSNIAFGSRETFMPNMKKWYVEDTASSSLGRAIILLKGSNKTATKDSMETVKADQSFKEKLEARQNMYGKPGSKSAQIETILRDSFAADKPKEPVAWSVGDVVAEIGASIPNEPPACQHGHVLKEGISKGGKPYYGYVCKAKECPPKWAKLTANGKWYFEGGE*
Ga0104986_101017	F007469	AGGAGG	MGELQIIDGSGLTATFTDDGVKVEPSTTYCDLCNDDRLLHEGDLLRCYNCHAINRIPYHT
Ga0104986_101018	F037698	AGGAG	MCADHDEMTHQINWAYQNKLREQWLLDNPDSQYIGWMSI*
Ga0104986_10102	F017290	AGGAG	MATVVITGRDVGLSFTGGTDIQAQATNAVLTKVNERQVYQTMDGEAYKTTNISGTFQLDMLADWGKANSVCEALWAAAESAPDTDISMTLTAASGAQFVFPVKPEFPTAGGSGTDAQTVSFTFTVSKGAVTETFS*
Ga0104986_10106	F013618	GAG	MSVFTPEYKLNINGVEYTDVTISDISHQAGREDIYAQPTPSYLQITIVALNNENYNFQINDGIALQVKDSTNTFRTLFGGNITDITTEVASASSIAETFSYTIIALGSLAKLPKVIYDGTLARDDDGDQIYELLADLFLNNWNEVPAAETWSGYDPTVTWANAENLGLGEIDRPGVYEITARGADSDTVYNIATLIADSAFGVLYEDNEGRIGYADALHRQNYLANNGYTEISANTAFGAGLKVLTRGADVRNDIILNYGNNFGSQVSAIDLDSIEVFGYRGETINTRLHDAVDAQAVADRFVALRSYPRALFDSITFPLTNSAIDNADRDSLLSIFIGQPMRITDLPVQIAPTGQFEGYVEGWRWSTRFNELFLTINLSPIEFSTVALQWEQVSASEAWNTLSGTLTWENAIGAVA*