Scaffold Ga0102859_1029439

Overview

Basic Information

• Taxon OID: 3300007708
• Scaffold ID: Ga0102859_1029439
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1471
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2342
  • Long. (^o): -123.9167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015570	Metagenome	253	Y
F024504	Metagenome	205	N
F029673	Metagenome	187	N
F032957	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102859_10294391	F032957	AGGAG	MDDFNPTTRMFPRTLQEAFPKDYVNEDIFEGAYYSAPHINDVWVLFGLIAVISMVAVALWRCF*
Ga0102859_10294393	F024504	AGGAG	MIRKTIGVEAPYRKSDYTYQNMLLDRIKDLEALVAKLEQRIKVLEAK*
Ga0102859_10294394	F015570	AGG	MNDKLDEAFDLLEFDVTDQIRNSAYLAEQRKVATGVTDGSIQRALVRDLTENLRTLPVSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS*
Ga0102859_10294395	F029673	GGA	MTKAEMIQHLRMAACSENTITGMANAFDLGAEHERDVVASIIFNMVKEQHLAQNIVDTIRVRE*