Scaffold Ga0102859_1014110

Overview

Basic Information

• Taxon OID: 3300007708
• Scaffold ID: Ga0102859_1014110
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2020
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2342
  • Long. (^o): -123.9167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015073	Metagenome / Metatranscriptome	257	Y
F055557	Metagenome / Metatranscriptome	138	N
F085385	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102859_10141102	F055557	GGAG	MKMKIAHDDEWMAAKVAIERVEEIEGKPDHVSRYNKNLSFHDYICEIAESVGAEIAVAKYFGIKDFNPRASRFKRTADVGSIIEVKWTKYDAGSLIIYDSDRSTDIAILVTGKSPNYVLKGWIPVAIAKNQKWRRRDQPTYWVEQYNLHPIENLRRSSHGEATLPMSG*
Ga0102859_10141104	F015073	GAG	MGFLDGYETVNQKVIRLHATYPTNRIETSIVDWQPEKGYILIECRIYRHYEDENPAAIDYAHGMVGAYNVQMKRWYIEDTVSSAIGRCASVVLGTETKPSLENMEQVETMPKSFIEDDPWSKPFGEDGFATAKSAMDDIKTKLGGEIVAESPICAHGHMLLKEGTSPKTNKPYRGHVCVEKVKANQCSPIWYEVTSNGGWAARS*
Ga0102859_10141105	F085385	GGAG	MYTLGEVAAWLLLGVLIGFTSGYTLGLKEGKREGFIRGKIAARKNAEIR*