Scaffold Ga0102859_1004756

Overview

Basic Information

• Taxon OID: 3300007708
• Scaffold ID: Ga0102859_1004756
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3207
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2342
  • Long. (^o): -123.9167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F001725	Metagenome / Metatranscriptome	645	Y
F023093	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102859_10047562	F001725	N/A	VAAINNGTVCLYAISGTVTNLFVQSYSLSSSFNAEATVVDETGLTKTHRLDDRKSEITIEGICKTSTMPVLGVALSFTLNASTAYPAGSASVSFVGTVTKIDEKGSNKGFTAVTVTAIDYEGITPA*
Ga0102859_10047563	F001055	N/A	MGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDNNATQTLPKAVVLCEAARAPSDLPEGEGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLVSIKAAFTATGDASCYDVTMQSEDEGIDERSWATSFTFDLLAVFPA*
Ga0102859_10047566	F023093	N/A	SNGSSAALLSAGAPIASLGQGKKIVAGGKTVRITTQTYKPASAWITLVVIDDNQ*