Scaffold Ga0102859_1001885

Overview

Basic Information

• Taxon OID: 3300007708
• Scaffold ID: Ga0102859_1001885
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4815
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2342
  • Long. (^o): -123.9167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004430	Metagenome / Metatranscriptome	438	Y
F014089	Metagenome / Metatranscriptome	266	Y
F037494	Metagenome	168	N
F105053	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102859_100188511	F004430	GAG	MATGIQVLSMLIPTGGWVIAGDNFEDIQFIEASPITKAQFEAGFAQYDSWKTEKEAERATGKAALLAKLGITEDEAKLLLS*
Ga0102859_10018855	F037494	N/A	MKVKPTIEDKVLAHTVALERIAQVNGHPDASSRYDRQLGFHDYVAQVAESIVAEILVARYLGYTDFDPRSSQFKKTADVGSFIEVKWTRYETGQCIIGEGDRATDVAVLVVGTSPNYRLAGWIPVAMAKRPKYKNSKQPTWWVDQKNLQPIENLKGSNYGQAAL*
Ga0102859_10018856	F014089	AGG	MSDLIEIIYPQSMTAKLLQNGEVIAEYKIEQCDSCAKLKKLDAFGYTKGQGGEKLTWLCGDCR*
Ga0102859_10018858	F105053	GGAG	MTSSELGLFVLMAIAGILWAAMSYSVGFREGQREGFKRGRAVSRHAAKDVR*