Scaffold Ga0102859_1001154

Overview

Basic Information

• Taxon OID: 3300007708
• Scaffold ID: Ga0102859_1001154
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5993
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2342
  • Long. (^o): -123.9167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004050	Metagenome / Metatranscriptome	455	Y
F007223	Metagenome	355	Y
F031078	Metagenome / Metatranscriptome	183	Y
F032196	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102859_10011541	F032196	AGGAG	MFNLEDYETVEERLIKFWKDHEDGQIHTRLLDSSSGRFIVEASIYRTEADA
Ga0102859_10011543	F007223	AGAAGG	MFDPSVGDVVVMFILAALYFHLGRTVGFRVGYLKGRKAVQTYYDKKERVKV*
Ga0102859_10011545	F004050	GAG	MARKKVIDLDTYSQLDAWAISRHEMYRALRRAGFAVDMCLAIIADRDAYPDWILPSIPDRVDRLPYEDDEDED*
Ga0102859_10011546	F031078	AGGTGG	MEAIIYATLGLIAIPVIRTAIKSYRAKKAVADILVDAIETAVDTVEKK*