Scaffold Ga0102898_1006986

Overview

Basic Information

• Taxon OID: 3300007658
• Scaffold ID: Ga0102898_1006986
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1555A-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2533
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2024
  • Long. (^o): -123.9409

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011394	Metagenome / Metatranscriptome	291	Y
F080048	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102898_100698610	F080048	GAGG	MSEKILCYCCNKTKNSLSAKKSTLLNINLLLCETCIDNKLEPRWVVILAGRQ
Ga0102898_10069868	F011394	GGA	MTFIDKDKDHFKYGINQWTGEPNKPTFYNKEMALKIRELKKPTPDLKMDIVKYPDFLAIRLYEDNFGRYDGSLKMRVIDYVEMVKKILESYGVRVELEGKPENGK*