Scaffold Ga0105532

Basic Information
Taxon OID	3300007650 Open in IMG/M
Scaffold ID	Ga0105532_100096 Open in IMG/M
Source Dataset Name	Human stool microbial communities from NIH, USA - visit 1, subject 604812005 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007650 Open in IMG/M

Scaffold ID

Ga0105532_100096 Open in IMG/M

Source Dataset Name

Human stool microbial communities from NIH, USA - visit 1, subject 604812005 reassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	84161
Total Scaffold Genes	110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (20.91%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

84161

Total Scaffold Genes

110 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (20.91%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F094005	Metagenome / Metatranscriptome	106	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105532_100096108	F094005	N/A	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLDGQFTRLDGKGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDEETFEKVITLDKKLKKLIEKLNE*
Ga0105532_100096109	F032312	N/A	MARIKDYDEDLSAPKLLKERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAMVCLGFTWFKLLGVALMMLLWPIVFIYATLNDGIEGYPFKKYAIPYIFILVVWFIIFLYELVS*
Ga0105532_10009611	F101357	N/A	MNLNNITTVLKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF*
Ga0105532_10009614	F105375	N/A	MKNIETFQTTQHLDNLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0105532_1000965	F044555	N/A	MKTTNPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILEFISGLDYMGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKNTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHDK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105532_100096

Overview

Ecosystem & Geography

Associated Families

Sequences