3300007650: Human stool microbial communities from NIH, USA - visit 1, subject 604812005 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007650
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052761 | Ga0105532
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 604812005 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 129959930
• Sequencing Scaffolds: 19
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → environmental samples → Faecalibacterium sp. CAG:74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F032312	Metagenome / Metatranscriptome	180	N
F041208	Metagenome	160	N
F042910	Metagenome	157	N
F044555	Metagenome / Metatranscriptome	154	N
F051934	Metagenome	143	N
F051935	Metagenome	143	N
F068856	Metagenome	124	N
F072366	Metagenome	121	N
F073656	Metagenome	120	N
F074898	Metagenome	119	N
F074899	Metagenome / Metatranscriptome	119	N
F076064	Metagenome	118	N
F077319	Metagenome	117	N
F089005	Metagenome	109	N
F094005	Metagenome / Metatranscriptome	106	N
F095494	Metagenome	105	N
F100397	Metagenome	102	N
F101192	Metagenome	102	N
F101193	Metagenome	102	N
F101357	Metagenome / Metatranscriptome	102	N
F105374	Metagenome	100	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105532_100096	Not Available	84161
Ga0105532_100460	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	37292
Ga0105532_101816	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	10436
Ga0105532_103227	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	5465
Ga0105532_104007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4501
Ga0105532_109398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2140
Ga0105532_109907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2047
Ga0105532_110554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1936
Ga0105532_111103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → environmental samples → Faecalibacterium sp. CAG:74	1855
Ga0105532_111564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1787
Ga0105532_112877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1631
Ga0105532_113043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1612
Ga0105532_115065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1421
Ga0105532_115956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1347
Ga0105532_119980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1095
Ga0105532_123342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	939
Ga0105532_128005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	774
Ga0105532_132126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	668
Ga0105532_134519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	618

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105532_100096	Ga0105532_100096108	F094005	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLDGQFTRLDGKGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDEETFEKVITLDKKLKKLIEKLNE*
Ga0105532_100096	Ga0105532_100096109	F032312	MARIKDYDEDLSAPKLLKERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAMVCLGFTWFKLLGVALMMLLWPIVFIYATLNDGIEGYPFKKYAIPYIFILVVWFIIFLYELVS*
Ga0105532_100096	Ga0105532_10009611	F101357	MNLNNITTVLKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF*
Ga0105532_100096	Ga0105532_10009614	F105375	MKNIETFQTTQHLDNLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0105532_100096	Ga0105532_1000965	F044555	MKTTNPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILEFISGLDYMGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKNTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHDK*
Ga0105532_100460	Ga0105532_10046013	F073656	MTMEQDQEQMQGALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH*
Ga0105532_101816	Ga0105532_1018163	F076064	LKKTIPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEVYYAAMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRYPMPVLKLY*
Ga0105532_103227	Ga0105532_1032274	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVTLLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRMRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0105532_104007	Ga0105532_1040075	F026592	RTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE*
Ga0105532_109398	Ga0105532_1093982	F101193	MARKCTEYHYFKHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLVPIELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPQYIYVRFFMPYETLSEDETRKFHELQKN*
Ga0105532_109907	Ga0105532_1099072	F074898	MRKILSLLLMLALFLPCALAETPQGIDLALTSTYGDGLSLWMTAGLGETPFCSLTLPSGQINLAFSPDKGLCVQSGGQWAQLLVEGHPVDAALLTTPLKLLDGRSPSEVLGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHNLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFRQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLNNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQARTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPDAIGTIELTQLLDGLF*
Ga0105532_110554	Ga0105532_1105542	F100397	MKKLIAILVLSLSLILCLTACGSKMPYDLSETASVELHAYNNDSTEPFAKIVVDGEDVATIVEMFNSLKLKEMKYTEPSIRGYEFWFRDENGSEIVKIELPYGPSPWLVVGGTEYPYQDVNGGVDVDYLAQLVDMTISAGPMQPEDGVDHNAPVEPLFYKSAPGLSIQHDGKSVRALPGTSSWQYMNPDGTSTGIEADSMHPLDAKEYMPVLPAVEGEAWLVFDTAPDEITVKAWPVSKWGDLSAVDEAIVVPVSGDKITLLEGGHIFE
Ga0105532_111103	Ga0105532_1111033	F101192	MQTEPSDKEGRNMTYRGWLLVDIALLLTALSGTQTSLCQRMRSVPVSRGLTYWEVQQLAKAAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG*
Ga0105532_111564	Ga0105532_1115641	F072366	MLDILAIKADVYHLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQENVEQWKKTLFEEAKERYPDSMLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNDMDQAVQSYFDDAMTWYRDNGRKLLEAKNKTNN*
Ga0105532_112877	Ga0105532_1128771	F041208	MRKILAMLLSVILLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISSSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAIASYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVQVTLDGTPYRFTMRLDMMAFTSVENANLHPTAAQTQRDILLLMRDNLAEKGVDVAQTFFAVQADDADGETNLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDMLTENDAAPAAPKREPIPTLESYQITLNGTAYTAFAINKVEKGYDTFADIAGTQTAVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFTIPQRDMADDAYEVEVDDKDGKVTGLWGPQDG
Ga0105532_113043	Ga0105532_1130431	F074899	WNKQAVTSSFLDKKPPESLILQGLEGSTTLGKDEVGSSNLPSSSK*
Ga0105532_115065	Ga0105532_1150652	F068856	VKDSGASAEGNVLAAAHAVLGKGRKGMKRLTSILLALLMLVGMALAEETPDAALGDWYALPSDETVLRLTLREDGTFFFGTEGISGIEGKWRKTTDGEYNLAYTNRSSSLLDVIMSMVDSQAPAPDMTMTARLTESGLDVFYGSTAEGAVVHMARDAEELRTERTPRTDTPLEAFAGTWTMETMFLGTMQLTYTPEMGERQVFCTIDGLTMFPGAGLESFPEGTSFPLTFEDGVLRTTIPLTVQMAASSALVKEIVVDYDLTFFQ
Ga0105532_115956	Ga0105532_1159563	F051935	MKRLLGLLLAMMVMMGGISCAVAENTNPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKGNQLRLLILRKQGDLWKVSEQNDRALMRDGWMLQNFSAMPYVNSDSTYIYFDFVDENQTEWELVLNLSTVYVSYFRMIYTAEEYGITEIVFNYERGVDFQFDAPFYFRLSYDVDPAKSLSFGVADFELATCPLSMREFLVPAVVSCGEEGAGLYIMAKQGIQPILVLADGEMIEAIPQRWQRDWVIVCYRGNYLFMKTENCKMEE*
Ga0105532_119980	Ga0105532_1199801	F051934	LKSLFRLLTVEGDVVASDGSFDARIDLSLTNAPEKTATRIRFFGLDSHWGIQTTDLGGETLMFNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGVRQAIADLAAQENDGRLENTALIACAEEIARLSEDDRALYYYIEAFGLESGTDADIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEETVFSYAEADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNAQVSFSLPVSYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTVIIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLSGPSGGTAPGGK
Ga0105532_123342	Ga0105532_1233421	F042910	GARCAGGCRRPGAGAGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAEGKISFQGLTLAPGAAVRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC*
Ga0105532_128005	Ga0105532_1280051	F095494	ETQRRLLNIIQAEAARTDAPTDETKIHTCMDLLERLQGEQKPIAPARVDALRQHIAAAHQKNERKRQKRKKIIAAAACSAAAIVVAFAVSHPLLWYENWTTSDEQQHFVTSHEIAIEMLETAVADPTLPSGDTVEVQSIAALDALIGRKTGIPEMVNGQWELQHRYVNFTRSGISISLMYVNAADAQQTIVGVINLISNPQYMMLSFEQSYEGTIQQFDGLNFYITENINKPVALWQGHDQTLLFFRRTSPPPAAAL
Ga0105532_132126	Ga0105532_1321261	F089005	KKCLTKSKQCSIIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQE*
Ga0105532_134519	Ga0105532_1345191	F077319	MQENTVCAANCTVQEKRGGQKIMLIRNATLQMSATERTCMDVRVMNGCVWEMGAALVKGLYESETDLCGDVLMPGRMLETPIPAADEKALRLLCRRLYREGVRYFVADCPADALLRVQNHPERRGALPVTALPTPEPLRSGTGMPLTRWTAAGGVVCGWVLYCRRGRSARGEALRRS