NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102940_1245953

Scaffold Ga0102940_1245953


Overview

Basic Information
Taxon OID3300007633 Open in IMG/M
Scaffold IDGa0102940_1245953 Open in IMG/M
Source Dataset NameSalt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)740
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.4965Long. (o)-122.133Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008719Metagenome / Metatranscriptome329Y
F097996Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0102940_12459531F008719N/ASFSDDALKRQQVAEHIQVKMAYQMKVTGADLGGFINSAIS*
Ga0102940_12459532F097996GGAGMTINRDGMHPRYLGFQRVEPVFVKIPFVSDGKNWKKSEHFNWAERDIEEKDAASLYATGHIYHNSELAKANKVGDRLGELNKEQLHSLVVQLNSIVKERTTTTKEFQDKRCKQSKIEDKQRGLIRRFLNRNPYIVEDFYRLRDYTLGN*

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