Sample 3300007633

Basic Information
IMG/M Taxon OID	3300007633 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125928 \| Ga0102940
Sample Name	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D1_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D1_MG

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	709727192
Sequencing Scaffolds	34
Novel Protein Genes	40
Associated Families	29

Dataset Contents

Total Genome Size

709727192

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	26
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Jannaschia → Jannaschia formosa	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin234	1
All Organisms → Viruses → environmental samples → uncultured virus	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1
All Organisms → cellular organisms → Bacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Jannaschia → Jannaschia formosa

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin234

All Organisms → Viruses → environmental samples → uncultured virus

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia

All Organisms → cellular organisms → Bacteria

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Ecosystem Assignment (GOLD)

Name

Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → wetland area → soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.4965	Long. (^o)	-122.133	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

South San Francisco, USA

Coordinates

Lat. (^o)

37.4965

Long. (^o)

-122.133

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005874	Metagenome	387	Y
F007787	Metagenome	345	N
F008719	Metagenome / Metatranscriptome	329	Y
F009454	Metagenome	317	Y
F011397	Metagenome / Metatranscriptome	291	Y
F032166	Metagenome	180	Y
F033769	Metagenome / Metatranscriptome	176	N
F034100	Metagenome / Metatranscriptome	175	Y
F038111	Metagenome	166	N
F039953	Metagenome / Metatranscriptome	162	Y
F049640	Metagenome / Metatranscriptome	146	Y
F050177	Metagenome	145	N
F054750	Metagenome	139	Y
F056354	Metagenome	137	N
F062297	Metagenome	131	N
F062489	Metagenome	130	Y
F063375	Metagenome	129	N
F066493	Metagenome	126	Y
F072017	Metagenome	121	Y
F073153	Metagenome	120	N
F075754	Metagenome	118	N
F086685	Metagenome	110	N
F087432	Metagenome	110	Y
F088532	Metagenome	109	Y
F090210	Metagenome	108	Y
F097996	Metagenome	104	N
F099972	Metagenome	103	Y
F100427	Metagenome	102	N
F104555	Metagenome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102940_1029649	Not Available	2623	Open in IMG/M
Ga0102940_1070659	All Organisms → Viruses → Predicted Viral	1552	Open in IMG/M
Ga0102940_1072097	Not Available	1533	Open in IMG/M
Ga0102940_1080750	Not Available	1431	Open in IMG/M
Ga0102940_1093747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Jannaschia → Jannaschia formosa	1309	Open in IMG/M
Ga0102940_1104144	Not Available	1230	Open in IMG/M
Ga0102940_1119160	All Organisms → Viruses → Predicted Viral	1135	Open in IMG/M
Ga0102940_1132006	Not Available	1068	Open in IMG/M
Ga0102940_1153253	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin234	977	Open in IMG/M
Ga0102940_1156069	All Organisms → Viruses → environmental samples → uncultured virus	966	Open in IMG/M
Ga0102940_1168303	Not Available	924	Open in IMG/M
Ga0102940_1168659	Not Available	922	Open in IMG/M
Ga0102940_1172487	Not Available	910	Open in IMG/M
Ga0102940_1175404	Not Available	901	Open in IMG/M
Ga0102940_1178963	Not Available	891	Open in IMG/M
Ga0102940_1183126	All Organisms → Viruses → environmental samples → uncultured virus	879	Open in IMG/M
Ga0102940_1200597	Not Available	833	Open in IMG/M
Ga0102940_1205734	Not Available	821	Open in IMG/M
Ga0102940_1209827	Not Available	812	Open in IMG/M
Ga0102940_1241052	Not Available	748	Open in IMG/M
Ga0102940_1245953	Not Available	740	Open in IMG/M
Ga0102940_1251528	Not Available	730	Open in IMG/M
Ga0102940_1264735	Not Available	708	Open in IMG/M
Ga0102940_1304532	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	654	Open in IMG/M
Ga0102940_1308981	Not Available	648	Open in IMG/M
Ga0102940_1320205	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
Ga0102940_1331678	Not Available	622	Open in IMG/M
Ga0102940_1336676	Not Available	617	Open in IMG/M
Ga0102940_1337723	Not Available	616	Open in IMG/M
Ga0102940_1401842	Not Available	558	Open in IMG/M
Ga0102940_1422912	Not Available	542	Open in IMG/M
Ga0102940_1429147	Not Available	538	Open in IMG/M
Ga0102940_1474122	Not Available	508	Open in IMG/M
Ga0102940_1474466	Not Available	508	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102940_1029649	Ga0102940_10296495	F086685	MIELTTIPLVVWVIGCITFVILGHELTHYIAWLPVATSIEYHFEDQYIEAEYPDTPFARKWAVVAGISPVIVATGLVLALIATGWDPIATWHHITASAAVVLYGVSGGKSDFQALLNLGRTRRSPAADD*
Ga0102940_1053699	Ga0102940_10536995	F100427	EWDVWGNELEIEHIATPWAMRWAIIASMAPLLVGTVVLMYWLSTQPAVTTHSAIMGIGLAVYTFAGGKADYGRLTDAVTTRLA*
Ga0102940_1070659	Ga0102940_10706593	F005874	MRMHARKQTMAMIPNMPPDDDLTPAELYDRVEDITNLTVEELQAFKGSDYNEIYNARKSDAAQRKDEPLDDVIRLLSTEPADWRDVDDGFNEVDEAEELLNFQRRTQAQIASQGLGENYLTEEEDMTMREAASIRWGIDPDDQREWL*
Ga0102940_1072097	Ga0102940_10720975	F056354	MILPVFIALSITAVVITGLAIRGDIPELLGAAVGAIMSIVAGINALDLFVITNSGNVKDIDPQTDIALILLVIFVINLIFIFD
Ga0102940_1080750	Ga0102940_10807502	F050177	MARVPSDPADDALTPQQLAERVDQVTNLTVEELEAFRESEYNEEYLAANSERAQRGNEPLDDVIRLLETPPEEWRDVDDGFNEIAEARELLDFQRRTQAQIKSQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL*
Ga0102940_1093747	Ga0102940_10937472	F088532	MTTLKLTDNEMQALAGLLDAGVKAIGLRAVKDAAPILEKLEAASQTESQKEDATDG*
Ga0102940_1104144	Ga0102940_11041444	F007787	MGKTKELAVMLNAESFEEMQFAQDFTKKEAKAKGQELAKTILDNGNANPLEVMATLSRLTEVINTFSEALKKDLNIPENETTLNGVHFKTRQGYPIYDYKQDGMINHYETLLKQRKDLIKQASKTGKPAVDPNNGEEIEGVPIKGYTKDSIVITF*
Ga0102940_1119160	Ga0102940_11191602	F097996	MAINRDGMHPRYLGWQVDWPIFVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLKSLVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFYTIRDTILGD*
Ga0102940_1132006	Ga0102940_11320063	F039953	MLANPLELRGRHRVNNMNPEIPVIEGWGNSTIEAYTGNHIGHRVPRKHLKVDTAP*
Ga0102940_1153253	Ga0102940_11532531	F054750	MKEIEELNEYVNQYYKCDRTNGEELLLLQQKISGLLYYLETVRSQQHDAFESKVFELVQEGKSVARAVNEAHVTYPLMYKLRRIMDAGYRIVDAIRTNISYLKSEMNNIKR*
Ga0102940_1156069	Ga0102940_11560693	F062297	MSMDDLERCPRRYTVLAERTEAGRVVEQSVTGQSRAEELFERWDEGEQLCNLRVKAISAPMDDVTRHFEHDWPPTNNSPVTSADDGSTETATKGWETR*
Ga0102940_1168303	Ga0102940_11683031	F032166	DAIRLLETPGYEYSAVDDGFNEVEEARELLDFQRRTQAQILSQGLGENFLTDARDMQKREAASIRWGIDPDEEREWL*
Ga0102940_1168659	Ga0102940_11686592	F050177	MARVPSDPPDDALTPQQLADRVDDVVNLTVEELEAFRDSEYNEEYLEYNSERAQAGNEPLDDVITLLETPPDEWRDVDDGFNEIAEARELLDFQRRTQAQIESQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL*
Ga0102940_1172487	Ga0102940_11724873	F075754	MKYQTDLRWHTPMNPWEPIHVRVDDSSEWYRTQVERGDYLRDTEEDAEMSHREHGLVAEGIVKAVFPGFEWWDTESFDLFRGQTRYDIISRNINRGEPRQNYLHHLLPKKEARAKPSTNYYAVVRKHPDYWLIGHINSVRFWYLCDRTRPEWWNEGTYEGGHLTYEHFK
Ga0102940_1175404	Ga0102940_11754044	F073153	MSEQDMPVRDEIARIDGNIEGILTRLGQQGESVARLDLLVEEMKEMNQQLEHIEIRLNTLEARIE*
Ga0102940_1178963	Ga0102940_11789632	F066493	VSQSREWTDGVIDVADELVQEHSAEGAIERLQRRRQTSDDELQARCNEAIAWIRREVQSDE*
Ga0102940_1183126	Ga0102940_11831262	F072017	MSLNQTPSFDSQSDTDIKSTVRKQDAIHTAVQEHMDVLTADDRLLDFYEWQQVIRSSETTVRRLAYSEIEEGVDQ*
Ga0102940_1200597	Ga0102940_12005971	F086685	MIDITTIPLVLWVLGCITFVILGHELTHYIAWLPVASSIEYHFEEQYIEAEYPDTPFARKWAVVAGISPVIVATGLLLALIATGWQPTATWHHITASVAVLLYGISGGKSEFDALFNL
Ga0102940_1205734	Ga0102940_12057342	F087432	MIIYENGEYTPCTYRVTLENRGVEETHYANFRTYWEDMVAKHDHLTNLSFEEITYSDEQNARLQEVAELNITQGFQSEVRTYVETGEFPEGYHHPLSDLKLAKENEQHQNDVDEAYQMILESEGLI*
Ga0102940_1209827	Ga0102940_12098272	F033769	MSVNCGIKTATNTPATVGVATGRKYLRLTNESTDMRCRAGDDGISNTAGIIIEPGETVEFRPLPSDNTDIYVMSEGKATKLAYYEVL*
Ga0102940_1241052	Ga0102940_12410522	F099972	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKKDIERELNEKQN*
Ga0102940_1245953	Ga0102940_12459531	F008719	SFSDDALKRQQVAEHIQVKMAYQMKVTGADLGGFINSAIS*
Ga0102940_1245953	Ga0102940_12459532	F097996	MTINRDGMHPRYLGFQRVEPVFVKIPFVSDGKNWKKSEHFNWAERDIEEKDAASLYATGHIYHNSELAKANKVGDRLGELNKEQLHSLVVQLNSIVKERTTTTKEFQDKRCKQSKIEDKQRGLIRRFLNRNPYIVEDFYRLRDYTLGN*
Ga0102940_1251528	Ga0102940_12515281	F005874	MGYGIPDDPPDRDLTPQQLHERIDEVTNLSADELRAFKDSDFNSTYNRVKSDAAQPGDEPLDDVIRLLETPASEYRDMDDGFNEIEEGRELLSFQRRTQAQIESQGLGENYLTDLEVMQVREAASIRWGIDPDDEREWL*
Ga0102940_1264735	Ga0102940_12647351	F009454	VLEEKLQDFKMPNFEEIEAAILEVQQPRSRFQLERFVIGQHKSEEMQFYQTCLELQDMIYKYQSAKLNVQKQELKIKRLRETGDELKELKAQELELGLKQTYTAMQGAEREMLALTEIFYSFPKRYTREEIEAAQPNYWDERLTGNAKAQLMGGSGVNPAHIEAMEQAGVLDKLIEEVQESKRELGL*
Ga0102940_1304532	Ga0102940_13045322	F049640	ARTSRGASAAGSVALPMVTERTAMEPRRIKVDLLPHERAALLKGGFTINDVHDQLVACASSPHVETITFTGADIHLLAGDLNHAIVKRGFRDVDILDLSDRMDYINDTSDGSLDRWY*
Ga0102940_1304750	Ga0102940_13047501	F104555	LDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIDANGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEVGATF*
Ga0102940_1308981	Ga0102940_13089811	F075754	MNPWEPIHVRVDDSSDWYRTQVERGDYLRDTEEDAEMSHREHGLVAEAIVKAVFPGFEWWDTESFDLFRGQTRYDIISRNINRGEPRQNYLHHLPPKKEERAKPSTNYYAVVRKHPDYWLIGHINSVRFWYLCNRTMPEWWNEQDYEGGHLTYEHFKQIKTGVGITPPPAIEVFGQG*
Ga0102940_1318820	Ga0102940_13188201	F063375	VGGHLQTVIAYGGVFMAGVIIGFESSDYPMMWPITQSYTGKAVTYPYTQLLEIGIGILAVCVMMIILLEWVVYLHER*
Ga0102940_1320205	Ga0102940_13202051	F038111	MIHRVPVVNRDNYTIWLENYKNIANFIHAEVYKYNKTTREDFGKDLDKLMDLHQNPLYVLVETDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV*
Ga0102940_1331678	Ga0102940_13316781	F032166	AAQAKDEPLDDVIRLLSTPPEAWKDEDDGFNEVQEAEELLDFQRRTQAQIASQGLGMNFLGDDQDMTMREAASIRWGIDPDDEREWL*
Ga0102940_1336676	Ga0102940_13366762	F075754	MMTSYQAGIEWHTPMNPWEPIHARVDDTSEWYAAQVGRSEYLRDSEEDADMHHRKGGVVAEGLVKAIFAGMEWWDTHSFDTFLGGTRYDIISRGLNRGEPRQHYVHKIQAKKEERAKPSTHYYAVVRNHPDYWLIGHINSVRFWYLCDRSAPEFWDDEQFDGGFLSYEHFEQLPVSEPI
Ga0102940_1337723	Ga0102940_13377232	F011397	MKDFELLKRTYPVSEFDRQCDGFAYICDNTSVEERMEWRINLKELQHIIKSGEKYIYQVAKEGKVFKAMCLSFSNYEIIRKYIFRIDDE*
Ga0102940_1401842	Ga0102940_14018423	F062489	MTAPDAIVIREEVTAGPTRRYVYHPLAAGGYERKTQLWRQATDGWHTTGTEVGESLAIDCPEGRR*
Ga0102940_1422912	Ga0102940_14229122	F056354	MILSVFIALSITAVVITGLAIRGDIPELLGAAVAAIMSIVAGINALDLFVITNTGNVKDIDPQTDIALILLVIFVINLIFIFDRAFSGGN*
Ga0102940_1429147	Ga0102940_14291472	F034100	MQLVKIEQQFEENPYLTVPIQENLLYDLPFKDFDKDGYEVPSPLEHLHYLENWVPLNREIQFHIAPVKPWYEDVEESEFGLVLDHCMLLSRWAFAGEARAKIEQAAKERPIL
Ga0102940_1436945	Ga0102940_14369451	F090210	DAEKGLVLDHCMLLTRFAFAGEARVQLEEVALERPILYKMLGIKPKWGIDFSLDYISQEICMEVIHIEQDFDNLEDAVAAKQKLENIIETTDWQAGAEELIARKSEWIDLSSDDHSDYKAQFFGVHRAFDNRKVFSS*
Ga0102940_1462737	Ga0102940_14627372	F104555	MRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIDANGIQATGEHWAAVLDTIGPVPQLYLDTV
Ga0102940_1474122	Ga0102940_14741221	F005874	MGYGIPDDPPDQDLTPQQLHDRIDEVTNLSADELRAFKDSDFNEAYNMAKSDAAQPGDEPLDDVIRLLETPASEYRDMDDGFNEIEEGRELLSFQRRTQAQIESQGLGENYLTDLEVMQVREAASIRWGIDPDDELEWL*
Ga0102940_1474466	Ga0102940_14744661	F005874	MAMIPNDPPDDELTPRQLYDRFEDAVNLDVDELRAFKASEYNEAYNATKSEAAQPGDEPLDDVIRLSETPASMWRDVDDGFNEVEEARELLDFQRRTQAQIKSQGLGENYLTEARNMQKREAASIRWGIDPDDEREWL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007633: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D1_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences