Scaffold Ga0102948_1011793

Overview

Basic Information

• Taxon OID: 3300007623
• Scaffold ID: Ga0102948_1011793
• Source Dataset Name: Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3045
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4962
  • Long. (^o): -122.1329
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025289	Metagenome / Metatranscriptome	202	Y
F041784	Metagenome / Metatranscriptome	159	Y
F044516	Metagenome / Metatranscriptome	154	Y
F095522	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102948_10117931	F095522	AGGAG	MDINLVEATPPEKVFTERSGSKYDKVINHAIDNKGTWFQVASVPVENRDSMYSTASAIRKGRLGNIPESENINITCRRVEDKVVMFIKAV*
Ga0102948_10117932	F025289	N/A	MWYISKRIEKGKQMNICEERQVSRWSMKQEIIDDLENYDEVTDDNIREICDSLVPVYNSELIDLASHYSGEEYWELWLNNELGGENPLDILRGNVFALYYQIGCEVLEEMKEEK*
Ga0102948_10117935	F044516	GAGG	MCRDTGYYEPRDDVAVKVVEEMVEKKNLSLMVYYLKMAYQEDQHTYMNDLYWVLQNKFDDVDLEAVKQHVEELLLIDDSDRELFEEE*
Ga0102948_10117937	F041784	N/A	MEKYMYTKTIGYCGVDSGQLFITDPCYIKHQEQGNGQWNMEWVDTDNGRSYKTLPDPTLDGETKNFYSKVCEANGKGNAGVEIELGVAFGTTHGDGNYAVQGIFDDDDVMVGIFMDLDGRVKGEFEYEQEEGW*