Scaffold Ga0102871_1003704

Overview

Basic Information

• Taxon OID: 3300007620
• Scaffold ID: Ga0102871_1003704
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1546C-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4825
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2311
  • Long. (^o): -123.8825

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025652	Metagenome	200	N
F025687	Metagenome / Metatranscriptome	200	N
F045085	Metagenome / Metatranscriptome	153	Y
F055439	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102871_10037041	F025687	N/A	MEKLNRKGFFSTLFGGIAGVVAGSTVKSSEPIVPPPVVETVVTCDKLVFTHSSGASCVMSFKDSDNFTIRVNNSENISINI
Ga0102871_10037042	F025652	N/A	MNNKTYFYRVAHKKYSWNGRYPMGPYAFFNESRFLLNIQKVPFSGCAYEKFVEFTSKEIVEYKKFNINNFNLKWVTTLPNAWRPGPFEDIDLREKMILRMGTMTKNGKFHLYGFDSLMQASKWYNNQEELQFLEDNEFRMYKFQIKSKNLIVGKTQSVYFPDINDDMDMLWISSTKLTDLNKSVNINNTTQTINKL*
Ga0102871_10037047	F055439	N/A	MNKISESIIVTYAKALRRIQTEQVDPYIELIEKELIKLYPELKDREDNALNWAYDIINADSTAEVVETLDRIKQIFEEEYKEKWVCCICGKNTYNVDCEYLAGIDHLSCLTTEELKKSNPLKNKDELSEVKNQFVNMKMYIKQLEEHIQRLEKQYDEPTN*
Ga0102871_10037048	F045085	N/A	MNKIINLTVGLIFGSIFAIGIILVIAIFFAVLIPSIFYFTVREVLKQLTKK*