Scaffold Ga0102923_1002616

Overview

Basic Information

• Taxon OID: 3300007606
• Scaffold ID: Ga0102923_1002616
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1569-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5397
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2861
  • Long. (^o): -123.7318

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005387	Metagenome / Metatranscriptome	402	Y
F045085	Metagenome / Metatranscriptome	153	Y
F055439	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102923_100261610	F005387	N/A	MEKLNRKGFFSTLFGGIAGVVAGSTVKASEPIVPPPVVETVVTCDKLVFTHSSGASCVMSFKDSDNFTVRVNNSENISINIHSPLKKPDFVKTETDYGFYGNNGNNGNTKMTITSNGNLGLGTCNPTAKLDIRG*
Ga0102923_10026163	F045085	N/A	MNKLYKVIDLTIGLIFGSLFAIGIILVIAIFFAVLIPSIFYFTVREVLKQLTKK*
Ga0102923_10026164	F055439	N/A	MNKISESIIVTYAKALRRIQTEQVDPYIELIEKELIKLYPELKDREDNALNWAYDIINADSTAEVIETLDRIKQIFEEEYKEKWVCCICGKNTYNVDCEYLAGVDHLSCLTTEELKKSNPLKNKDEFVEIKNQFVNMKMYIKQLEDHIQRLEKQYDEPTN*