Scaffold Ga0102828_1013714

Overview

Basic Information

• Taxon OID: 3300007559
• Scaffold ID: Ga0102828_1013714
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1693
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F068572	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102828_10137141	F068572	N/A	IASMSAIDTQSATQFLSQNKQTIWAVNQSASRSMPTSR*
Ga0102828_10137142	F000934	AGG	MSLNQILAISETVGINDHRFIGQMLSRNQRISTSEIITVVPFSFDMKPMNYLLYSQNRALLNSLRIPDMALQQYLNFGTTGWANYITYQGSMSSGQISACAWQTSSANKTLVLGSLPSIDAGAYIVKAGDFCQVGFYPYIATADVVRGAGSTVNIPVHRNLITTLASPLNAVIGQYGTTVSMGGSTYTGTTFQVILRAYPTYTLMSYANDSYIQWSGGFTAFESVL*
Ga0102828_10137143	F002085	GAG	MNVITPVDNTNNIRIADFVRLTTPDGTYRFATTASSLTIGAVDAQPFQALGQLVKVGDAVKDIKSTANETTITLVGIDQTMLGLVLGQNIKGSQLEMWHGFFDTNGALITAGGSGGLYQFFNGYVNSFAISEQWNEESRSFMGAITVAASSIQLILQNRTAGRFTNNNSWTFYNPTDTSMNRVSFVTTINYLFGKTT*