Scaffold Ga0102828_1004991

Overview

Basic Information

• Taxon OID: 3300007559
• Scaffold ID: Ga0102828_1004991
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2568
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000370	Metagenome / Metatranscriptome	1221	Y
F019801	Metagenome / Metatranscriptome	227	N
F085399	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102828_10049912	F019801	N/A	LTRPINQYKDIREKMTYLIKVFTNGMKIQFTLESEPINTTESLHQKVLDFLGKTSKEQLEKMISHKQISNFFYITYEEVERDIIVPITSGQENRLGVTVEQVLS*
Ga0102828_10049913	F085399	GGA	MQWLDVELKEVKRQILQQDLDAARQENNLVLSEEEDPAFIAS*
Ga0102828_10049915	F000370	AGGAG	MSYKSDVKPVYIAAANAVAFAGRTRLRGYVVQSTGSSGTLIINGLANATTVSSSTNTQVFFTVSVGAGQTETLNIPEDGVLYSANNGTGVVDGIGVTANASALTAVLFIDK*