Scaffold Ga0102828

Basic Information
Taxon OID	3300007559 Open in IMG/M
Scaffold ID	Ga0102828_1000716 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007559 Open in IMG/M

Scaffold ID

Ga0102828_1000716 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5882
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5882

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2	Long. (^o)	-123.94	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2

Long. (^o)

-123.94

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003332	Metagenome	493	Y
F024785	Metagenome	204	Y
F029717	Metagenome	187	Y
F055728	Metagenome	138	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0102828_10007161	F029717	AGG	MSNFMDGYVDVATRLKLAFEKYPDLRIQETAREVVEMPDKSCFIRCTVTI
Ga0102828_100071611	F003332	AGG	MAGTAVVQSGDYELEIDTGFIQDGFTLDSPTMGLLDNTEFVLDGTTNFATVLGGCGNVTIKRGRQDIGDQFSAGTMSFVMLDTTGLFNPFNEDSPYWDSTTEQPGLAPMRKVRFSRYDTNDVKQYLFKGFIVNYDYNFALGGIDTVTVYCSDDFYLLSQTYMAEFNVSEQLSSARITAVLDLPEVAFPIAQRAISTGTQTLGGSAAFTVENGTSVQAYLAQINQAEQGRLFMSRNGNLTFQPRIGNTISGSVADFHDDGTNIPYSNVGISFQADQVCNRASVTIAGSNTPQVANDLASQAVYFIQTQSITGSLLHSNGAAATLADYLLVGEPEARYTSVETAFMSLTNAQRDQVAIIDIGQTITIEHSFTTGATTSELAQELAIEGVEHTISLSQGHSITLFTSPTVIVYELILDDAVYGILNAGNVLG*
Ga0102828_10007163	F055728	AGGA	MRRSYDPHYGSREQLRDSAEHGMKVARERDALKKENELNIAALKASIRVQAEYLDEITELKAIIKYMTEGE*
Ga0102828_10007167	F024785	N/A	MKPYTINAAPVVAKPLAGMNLWVTRAVYHSDKSCWNNGSWVVRDVRGKPGIVSNHAKGVACDISYRWLSATNKGRQDGRKVSLAYMNKLLENADTLGIELVIDYALNRSWRCDRATWKAGTFEPGDWWHVEVNPVIAHSEELAKQAWDKVFGLIPAVIKKPV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102828_1000716

Overview

Ecosystem & Geography

Associated Families

Sequences