Scaffold Ga0102873_1000193

Overview

Basic Information

• Taxon OID: 3300007545
• Scaffold ID: Ga0102873_1000193
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22969
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2314
  • Long. (^o): -123.8828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038246	Metagenome	166	Y
F060917	Metagenome / Metatranscriptome	132	Y
F091936	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102873_100019343	F091936	AGGA	MNDGLDRSMRLKLVIEDMLKDIDMSGEEWNDRDKDGVAYWEKWNKND*
Ga0102873_100019344	F060917	GGA	MIDWLVHKLFWWAPLRKAIFEEVHMYDHLSDVFTGSDLTDIASCSWMEGDMWYGWTYDSNAKRYYFDDIGNKSLIGLWEDQWLKEAEQDVKMD*
Ga0102873_100019354	F038246	AGGA	MGILDNLEAYLEAEETEKCHYCQAVAKYNDLAEVDQTYQIVGVCACHSFKGLSS*