Scaffold Ga0102861_1012994

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1012994
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2013
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011484	Metagenome	290	Y
F027417	Metagenome	194	Y
F038999	Metagenome	164	Y
F086805	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_10129941	F038999	N/A	LLMTKTQEQGTKLSFPCTCNGCRNHPTRPAEIWHESQIPSKAQGYFFTPDTMRFFKSRIADFKPVGISPRADSLMVIVSNKRDDDPRYYEIVTLCPYGELGREWVKDSDGSPIASYESLYKARKSARWNCTIAAQIGDCHGCQLDKAGR*
Ga0102861_10129942	F086805	AGGCGG	MRELSKLGNLVAGIALGLAIAALWYISGHLWYVEGEGYCIGTLAQCFH*
Ga0102861_10129945	F011484	GAGG	MRELEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQVRRALNLPQIMREVAS*
Ga0102861_10129946	F027417	GAGG	MGYNYRVTFVTDYLTITTNVELEVDDYFQNLSDAAYEQATINGKNNIEDEIGKIDESIINDITVTLILDDEEIELGSFGEFPPVHVEVVS*