Scaffold Ga0102861_1000555

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1000555
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8081
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019438	Metagenome	229	Y
F057982	Metagenome	135	N
F064409	Metagenome	128	N
F079703	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100055512	F079703	GGAG	MIDPNKLQYFTMAAWLRGYADSLNEHEQRTLVNKLKKAAGMLDDVWSKYVEKQEVDE*
Ga0102861_100055516	F064409	AGGAGG	MKLFKLKGISKKYALRAAQYRRVARGQAVAGLAFTENALRELHDWESRGIGSVDKSRNGFAYGKWCVDLSVSMWVEDLMKGDFCKAEFLETRLQKLHNAKKLEAVIANPFFPHAIALEERA*
Ga0102861_100055517	F057982	GGAGG	MRYRITYSNGNYSDWDAMQKELAWAYRWGVFLYAIRLNIGAWRAGHKSFKYWLYVLRRKPKITKEEA*
Ga0102861_100055518	F019438	AGGAG	METIATTILLGFIGVVVAGLVLVALMRLWFWMDEEDRRDR*