Scaffold Ga0102861_1000225

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1000225
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14371
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (89.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015204	Metagenome / Metatranscriptome	256	Y
F019438	Metagenome	229	Y
F046909	Metagenome / Metatranscriptome	150	Y
F078264	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100022510	F078264	N/A	VAARKRGRPRKNGRPKKDSYEKVRASPSKRAGQRWISVSLPEEAYYMLKEIAAFYKVGMGSYMYSIILPAFDYAYEQSLTLQRIDANKKKAKNEIPDRDDVPRRTHF*
Ga0102861_100022516	F019438	GGAG	MTETIVATILLGGLGMIVAGLVLIGLMKLWFWMDEQERNDR*
Ga0102861_100022521	F015204	AGGAG	MTFQSWWEQLTKAERKMIGETNAQFVWEECQKYTLMTIEDACKAQVAYDQGFKDARERYEVKIAGWTLTPGIQPGMIWITNFGGEGGDFHIHELAEVIGKFYKEKF*
Ga0102861_100022524	F046909	GGAGG	MMTPPSKNLCLMMAKVTFTRDEKLSWTWLVAWAFHEMYVEGWYQEWKP*