Scaffold Ga0102861_1000040

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1000040
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37422
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (35.53%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002333	Metagenome	569	Y
F002876	Metagenome / Metatranscriptome	524	Y
F003601	Metagenome / Metatranscriptome	477	Y
F013517	Metagenome / Metatranscriptome	270	Y
F022857	Metagenome	212	Y
F040073	Metagenome	162	Y
F067649	Metagenome	125	Y
F073444	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100004010	F003601	AGG	MTEYTDDQLLAQALSNLGEYIHTHGTPDYVLVDSEDPRNEDDYDTWSYGTEPLPHDHTWQHASIDVSISPSEPE*
Ga0102861_10000402	F001165	N/A	MSDSLRIPDSIDTQRLQAMQLVAKMKESADKHGIGFIGGFISPDGQKFIMTNMDDDDTQALLPDNLK*
Ga0102861_100004032	F040073	N/A	MLKFESSAEDLFWQEKMFRTINDCTSLSELKEIAVLLTKIATTRQMAIKGLVNDALNLMHENYSSKAKDITDSLS*
Ga0102861_100004034	F002333	N/A	MQLQTELNSAQALIYSRSNIGRAYAGFDDTEISGIYLRDDNCIVVRRDGDEQAYDRTLIKTAFQQYTHRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWNYSHALGHLTSNAKLQQHWADKFIHLSDPGKVVALLQNDQTDLGHLVAPDGLRSPTRPIDLESELEENASGVQASTPEPYCSCGSFQRQLLDVSLFQQEIEGFKPWCIHLTWFHKYRELLCKRTEVRNALLSGTPDKCVAWWYAPPVDHLSDGKFVLLHTKSGAQAPLTHWRTYKPKEVFNQTHAWDLFFNMMEAGYVPFPGTALPQLQSAIKKK*
Ga0102861_100004038	F013517	N/A	MFESLFTAVLPVMKDILWAAAGMLLSYAINKFQSNFN*
Ga0102861_100004039	F001018	N/A	MTQITQVKLKDLNILKLYEHYGALERSIPLLTPESQELAQAELEACASLRSEKVDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLSWLRRSLPLDSNKISGRNYQFTLTRKKDLTVEITSDPEFWHTEERADYCIEEEITTTKRVVLRSMSGEVLDERTEPKTTTKIVPNLDAIRTAHQTGRQLPSGVKVIQEYSVRSKRIYAEPRVELEASEYPGHLLPED*
Ga0102861_100004040	F073444	N/A	MNCHQHAVKDFDLQLEMNNLELDMIKDGEEVLPYNISKFEELEQKKLKLLVGKRFHQNAANAYWFHLAKCGK*
Ga0102861_100004042	F022857	N/A	MDPVYVPKLTVSFAVDLEVEYDSFGGRTPQDIAIALQDELDNLLFETSPSVKGVFTSITAIDSND*
Ga0102861_100004063	F067649	N/A	VEIPIFMGEWINTLQSRMTNAMDGDCFLLPTYMHLHAFTILKDGMFAERDFKVELQNTKEAQ*
Ga0102861_10000407	F001807	AGG	MNVLAIEHTVIDGNDVTVTAVVDDMRLIHRSTYLDPEEYAPALCRASFELDEGEQIPLDEDGFCSYLTDLNPNWELLPVDND*
Ga0102861_100004074	F002876	N/A	MTCKKSELVSAINSFSSARVTGDGNLIAFAGNLVGQLLETIEFEPEEPVETTETEVVE*