Scaffold Ga0099847

Basic Information
Taxon OID	3300007540 Open in IMG/M
Scaffold ID	Ga0099847_1000236 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007540 Open in IMG/M

Scaffold ID

Ga0099847_1000236 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18615
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (30.77%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

18615

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (30.77%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	37.1	Long. (^o)	-76.0972	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

37.1

Long. (^o)

-76.0972

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F011218	Metagenome / Metatranscriptome	293	N
F015723	Metagenome / Metatranscriptome	252	Y
F033779	Metagenome / Metatranscriptome	176	Y
F039112	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099847_100023618	F010908	GAGG	MKQVFSPFQQLECFRVDGVDYICLDYQIIQDSEDKLVEWCSWFKFKRLSDHKHYLLPITKIIETKKEGRATLCKCK*
Ga0099847_100023619	F009202	N/A	MYPSEELHDLYIREKQLMLSGTAMWLAKQASDKANGREIQDELLDHVMNCHNADQLLQQFIDYRLFANRKLNEVMLANAQLRVNNEEMIMEIERLQRIIEDNI*
Ga0099847_100023621	F015723	N/A	MAKIVSITPKGQWQEFYKLDIRFDNGDFGTAFAKSPNPSYNVGDEVDYTKNEKGTIKINKPFTGGGFSGGNGGSFATASKSAGDERSASIIRQVALKAAVEYACAAGHDVDTILANAATFNEWMTGTQSAATHQEHFATRNESPF*
Ga0099847_100023622	F039112	N/A	MTLSLSQDTYSQTIIAQQAQIKALQDKVQELSARIEVLEQQSILFI*
Ga0099847_100023623	F009600	GAG	MFYASKHWTFRAKAKDKHCNEVLQQLQELDCVPIQHVYITCKVNYRYDIDNSIMAVKFALDAFRKWGGVKDDSRAYVRKLKMEHDPDIHPDTAEITFTGLLVNQ*
Ga0099847_100023624	F011218	AGGA	MQYYTNPAKRRKIDFLLAECASLFANCDSTYQARQEAKYKEQSILAEIAKIDIHFAIQCGYLQQDN*
Ga0099847_100023627	F033779	N/A	MLNNRLATLTILTAAILAGLSGCRTAQPILESVIVRDTVIVTESKYLIDTLEVMKDTVIYQDKVRLQLQYIDRKVVVEAACEPDTIRITQTKVVTKQEAKPERWGLESYVGMLALVLTIVYVIKRWIDKLTE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099847_1000236

Overview

Ecosystem & Geography

Associated Families

Sequences