Scaffold Ga0099849_1325319

Overview

Basic Information

• Taxon OID: 3300007539
• Scaffold ID: Ga0099849_1325319
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 551
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039109	Metagenome	164	Y
F095151	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_13253191	F095151	AGG	MTDKSKYSNVTVDNKTYEIITKLQTKLVPDMKISR
Ga0099849_13253192	F039109	N/A	MIVTLCHFDLFGQEGCIPMTPEPQIYYSSKEECMKATKAKMDDMATIAIYNNIKITKLYANCFEDKSKPNT*