Scaffold Ga0099849_1008167

Overview

Basic Information

• Taxon OID: 3300007539
• Scaffold ID: Ga0099849_1008167
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4722
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F018155	Metagenome / Metatranscriptome	236	Y
F058166	Metagenome / Metatranscriptome	135	N
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_10081671	F018155	AGGAG	MGQNSQAVEKRRKELEAEKLDKQIKTYYFQKGAGKHYREVTYMSGKIVRTEFND*
Ga0099849_10081672	F067646	AGGA	MIEWILYFIAGTFGLVAIGGLISIVAAIYILNELD*
Ga0099849_10081675	F058166	AGGAG	MDILGGMSNSSDSQQVYLAFKTADQQFFVNGQTAIDFKYLQLDPATFKSGWGRYAGEYQYQWDAKFGEASPKPADDWKRAFSCCVMPHGHDHALIWSRFTFAESSAFNKILSSFWNQMDANSNSLPVVEYKGSKEIQVGIGRSSELSFEFSKFAPRFANFDIPAFYDKDDDAVEDTFKSPNDGLADKVQEMVDKNELTDDDIPF*
Ga0099849_10081677	F002221	AGGA	MSNYLEESLKDKLKQLRVYEAETKVKWGNFKRIYKMVGVDFEIKFIKAEQLLKKSLREDPPKKQIAMVEMMMRAYEQLNIKCEESGYIMIQPNAKCFTFDKKTALICDTDDEKPTLELIHKDEEDIMIFSIEELLRCIPNDFMKAKELLSKLDKSVNIQRVDYV*